From 91e1cda26f2afee56c6073e3fdd37936b9a7b440 Mon Sep 17 00:00:00 2001 From: mcsiple Date: Sat, 29 Jan 2022 17:59:49 -0800 Subject: [PATCH] update zenodo.json file and rebuild by x manual file --- .zenodo.json | 4 +--- man/rebuild_by_x.Rd | 14 +++++++------- 2 files changed, 8 insertions(+), 10 deletions(-) diff --git a/.zenodo.json b/.zenodo.json index 2fb1ca4..4dd91b9 100644 --- a/.zenodo.json +++ b/.zenodo.json @@ -81,9 +81,7 @@ "scheme": "doi", "identifier": "10.5281/zenodo.4758402", "relation": "isDocumentedBy", - "upload_type": { - "type": "software" - }, + "upload_type": "software" } ], diff --git a/man/rebuild_by_x.Rd b/man/rebuild_by_x.Rd index 5bab72a..c942b2f 100644 --- a/man/rebuild_by_x.Rd +++ b/man/rebuild_by_x.Rd @@ -15,25 +15,25 @@ rebuild_by_x( ) } \arguments{ -\item{needf.start}{starting guess for the bycatch mortality rate needed to recover the population} +\item{needf.start}{Starting guess for the bycatch mortality rate needed to recover the population} -\item{init.depl.w}{initial depletion (a fraction)} +\item{init.depl.w}{Initial depletion (a fraction)} \item{goal.w}{Population size goal (number of whales or pinnipeds) to rebuild to, expressed as a whole number} -\item{desired.prob.w}{what probability you want (e.g., 0.75 probability that the population will rebuild to X in Y years)} +\item{desired.prob.w}{What probability you want (e.g., 0.75 probability that the population will rebuild to X in Y years)} -\item{when.w}{the year Y when rebuilding is desired by (number of years into future; current year = 0)} +\item{when.w}{The year Y when rebuilding is desired by (number of years into future; current year = 0)} -\item{lh.params.w}{a list of life history parameters used by \code{projections()}} +\item{lh.params.w}{A list of life history parameters used by \code{projections()}} -\item{fixed.cv.catch.w}{the CV of the bycatch rate - should be fixed} +\item{fixed.cv.catch.w}{The CV of the bycatch rate - should be fixed} } \value{ The bycatch rate that will result in the specified rebuilding goal. If Shiny is running, it will return a list containing the bycatch rate \code{f} and a matrix of guesses that \code{optim()} has searched through to find the solution. } \description{ -takes a performance goal (what level you want to rebuild to) and a time window (how long you want that to take) and calculates what the bycatch rate needs to be +Takes a performance goal (what level you want to rebuild to) and a time window (how long you want that to take) and calculates what the bycatch rate needs to be } \examples{ rebuild_by_x(