diff --git a/multiSub b/multiSub index 0d74788..12837f0 100755 --- a/multiSub +++ b/multiSub @@ -1942,6 +1942,9 @@ def main(): gisaidReportFn = join(outDir, "gisaidFail.txt") upGisaid(gisaidSeqFn, gisaidMetaFn, gisaidReportFn) + elif cmd=="up-sra": + outDir = args[1] + else: errAbort("Unknown command: %s. Must be one of conv, convDir, up-ena, up-gisaid, up-genbank, up-biosamples, down-biosample, down-genbank" % cmd)