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Issue with the common names displayed while parsing taxonomy information #35

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DeepaMahm opened this issue Sep 19, 2019 · 0 comments
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@DeepaMahm
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Hi @matthiaskoenig
Source code: example.py

While parsing proteins by taxonomy using parse_proteins_by_taxonomy() function defined in
the above file , the following output is displayed for ec = "1.1.1.1"

 protein_id                               organism  taxonomy         common_name  common_dist
23           12                  Oryctolagus cuniculus      9986    Euarchontoglires            9
153           9                      Rattus norvegicus     10116    Euarchontoglires            9
78            2                     Cricetulus griseus     10029    Euarchontoglires            9
111           5                           Mus musculus     10090    Euarchontoglires            9
96           36                   Mesocricetus auratus     10036    Euarchontoglires            9
19          116                           Mus musculus     10090    Euarchontoglires            9

The common names are the same for all the above organisms. Could you please look into this?

@matthiaskoenig matthiaskoenig self-assigned this Sep 19, 2019
@matthiaskoenig matthiaskoenig added the bug Something isn't working label Sep 19, 2019
@matthiaskoenig matthiaskoenig removed their assignment May 16, 2022
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