parameters.inp

alpha=0.004 #initiation rate
beta=0.01 #termination rate
gamma=9.99 #reinitiation rate
k=10. #(av.) elongation rate
footprint=1 #size of the TASEP particles
t_max=3000 #simulation time 
dt=1 # measurement and output (for time evolutions) interval.
no_runs=50
detailed_output=0  #higher number increases verbosity.
length=400 #length of transcript. Alternative: RNA_filename=... (give filename for sequence data)
mode=0 #standard run: 0; exp. dist. lifetime: 1; exp. dist.+fixed lifetime: 2; single slow codon: 4-6; read RNA file, but av. elongation rate: 8.
lambda=0. #speed of single slow step