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create_openmm_system runs the parameter assignment for OpenMM and it might be a safer option than label_molecules(). For example, the latter does not care about aspects such as exclusion lists (see issue #24).
Solution
Check the differences between both methods before performing any substitution. In case, it happens to be a better method to obtain the parameters for PELE, replace it in: toolkits.py
The text was updated successfully, but these errors were encountered:
Description
create_openmm_system
runs the parameter assignment for OpenMM and it might be a safer option thanlabel_molecules()
. For example, the latter does not care about aspects such as exclusion lists (see issue #24).Solution
Check the differences between both methods before performing any substitution. In case, it happens to be a better method to obtain the parameters for PELE, replace it in: toolkits.py
The text was updated successfully, but these errors were encountered: