From 989c955da3bd85d9ecd66344d982e00d3f52a45d Mon Sep 17 00:00:00 2001 From: Brian Ondov Date: Thu, 22 Oct 2015 11:30:00 -0400 Subject: [PATCH] license updates and help proofreading --- LICENSE.txt | 18 ++++++++++++++---- src/mash/Command.cpp | 6 +++--- src/mash/Command.h | 4 ++-- src/mash/CommandContain.cpp | 4 ++-- src/mash/CommandContain.h | 4 ++-- src/mash/CommandDistance.cpp | 6 +++--- src/mash/CommandDistance.h | 4 ++-- src/mash/CommandFind.cpp | 4 ++-- src/mash/CommandFind.h | 4 ++-- src/mash/CommandInfo.cpp | 4 ++-- src/mash/CommandInfo.h | 4 ++-- src/mash/CommandList.cpp | 30 ++++++++++++++++++------------ src/mash/CommandList.h | 4 ++-- src/mash/CommandPaste.cpp | 4 ++-- src/mash/CommandPaste.h | 4 ++-- src/mash/CommandSketch.cpp | 4 ++-- src/mash/CommandSketch.h | 4 ++-- src/mash/HashList.cpp | 4 ++-- src/mash/HashList.h | 4 ++-- src/mash/HashPriorityQueue.cpp | 4 ++-- src/mash/HashPriorityQueue.h | 4 ++-- src/mash/HashSet.cpp | 4 ++-- src/mash/HashSet.h | 4 ++-- src/mash/Sketch.cpp | 4 ++-- src/mash/Sketch.h | 4 ++-- src/mash/ThreadPool.h | 4 ++-- src/mash/ThreadPool.hxx | 4 ++-- src/mash/capnp/MinHash.capnp | 4 ++-- src/mash/hash.cpp | 4 ++-- src/mash/hash.h | 4 ++-- src/mash/mash.cpp | 4 ++-- src/mash/memcpyLink.h | 4 ++-- src/mash/version.h | 4 ++-- 33 files changed, 96 insertions(+), 80 deletions(-) diff --git a/LICENSE.txt b/LICENSE.txt index 83dc74c..47a9a0b 100644 --- a/LICENSE.txt +++ b/LICENSE.txt @@ -3,15 +3,25 @@ PURPOSE Mash is a fast sequence distance estimator that uses the MinHash algorithm and is designed to work with genomes and metagenomes in the form of assemblies or reads. It is implemented in C++ and is -distributed with KSeq (lh3lh3.users.sourceforge.net/kseq.shtml) and -MurmurHash3 (code.google.com/p/smhasher/wiki/MurmurHash3). +distributed with: +KSeq + lh3lh3.users.sourceforge.net/kseq.shtml + MIT License + +MurmurHash3 + code.google.com/p/smhasher/wiki/MurmurHash3 + Public domain + +Open Bloom Filter + https://code.google.com/p/bloom/source/browse/trunk/bloom_filter.hpp + Common Public License COPYRIGHT LICENSE Copyright © 2015, Battelle National Biodefense Institute (BNBI); -all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -Adam Phillippy +all rights reserved. Authored by: Brian Ondov, Todd Treangen, +Sergey Koren, and Adam Phillippy This Software was prepared for the Department of Homeland Security (DHS) by the Battelle National Biodefense Institute, LLC (BNBI) as diff --git a/src/mash/Command.cpp b/src/mash/Command.cpp index f3f3444..284dd09 100644 --- a/src/mash/Command.cpp +++ b/src/mash/Command.cpp @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. @@ -162,7 +162,7 @@ Command::Command() addAvailableOption("individual", Option(Option::Boolean, "i", "Sketch", "Sketch individual sequences, rather than whole files.", "")); addAvailableOption("warning", Option(Option::Number, "w", "Sketch", "Probability threshold for warning about low k-mer size.", "0.01", 0, 1)); addAvailableOption("unique", Option(Option::Boolean, "u", "Sketch", "Remove (most) unique kmers using a Bloom Filter. This is useful for reducing noise from sequencing errors in read sets. See Bloom filter options below. Incompatible with -i.", "")); - addAvailableOption("genome", Option(Option::Size, "g", "Bloom", "Expected genome size (raw bases, or with K/M/G/T). Helps pick the Bloom Filter size. Should be within an order of magnitude of the true size. Implies -u.", "5M")); + addAvailableOption("genome", Option(Option::Size, "g", "Bloom", "Expected genome size (raw bases or with K/M/G/T). Helps pick the Bloom Filter size. Should be within an order of magnitude of the true size. Implies -u.", "5M")); addAvailableOption("memory", Option(Option::Size, "m", "Bloom", "Maximum Bloom Filter memory usage (raw bytes or with K/M/G/T). More memory will allow more thorough detection of unique kmers, so this should be as high as is practical for the computing environment (though it may not actually be used). Implies -u.", "1G")); addAvailableOption("bloomError", Option(Option::Number, "e", "Bloom", "Target false-negative rate for Bloom filtering unique kmers with. Implies -u.", "0.1", 0, 1)); addAvailableOption("noncanonical", Option(Option::Boolean, "n", "Sketch", "Non-canonical. By default, canonical DNA kmers (alphabetical minima of forward-reverse pairs) are used, and kmers with non-acgtACGT characters are ignored. This option uses kmers as they appear and allows all characters.", "")); diff --git a/src/mash/Command.h b/src/mash/Command.h index 97a05f8..c5fe76c 100644 --- a/src/mash/Command.h +++ b/src/mash/Command.h @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/CommandContain.cpp b/src/mash/CommandContain.cpp index 26f1a6b..f5244f5 100644 --- a/src/mash/CommandContain.cpp +++ b/src/mash/CommandContain.cpp @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/CommandContain.h b/src/mash/CommandContain.h index dca4039..d284db1 100644 --- a/src/mash/CommandContain.h +++ b/src/mash/CommandContain.h @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/CommandDistance.cpp b/src/mash/CommandDistance.cpp index e67eeae..fcc2644 100644 --- a/src/mash/CommandDistance.cpp +++ b/src/mash/CommandDistance.cpp @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. @@ -25,7 +25,7 @@ CommandDistance::CommandDistance() { name = "dist"; summary = "Estimate the distance of query sequences to references."; - description = "Estimate the distance of each query sequence to the reference. Both the reference and queries can be fasta or fastq, gzipped or not, or mash sketch files (.msh) with matching k-mer sizes. Query files can also be files of file names (see -l). Whole files are compared by default (see -i). The output fields are [reference-ID, query-ID, distance, p-value, shared-hashes]."; + description = "Estimate the distance of each query sequence to the reference. Both the reference and queries can be fasta or fastq, gzipped or not, or Mash sketch files (.msh) with matching k-mer sizes. Query files can also be files of file names (see -l). Whole files are compared by default (see -i). The output fields are [reference-ID, query-ID, distance, p-value, shared-hashes]."; argumentString = " [] ..."; useOption("help"); diff --git a/src/mash/CommandDistance.h b/src/mash/CommandDistance.h index 7337706..251a149 100644 --- a/src/mash/CommandDistance.h +++ b/src/mash/CommandDistance.h @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/CommandFind.cpp b/src/mash/CommandFind.cpp index aebf446..e778027 100644 --- a/src/mash/CommandFind.cpp +++ b/src/mash/CommandFind.cpp @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/CommandFind.h b/src/mash/CommandFind.h index 39cda83..a83a35b 100644 --- a/src/mash/CommandFind.h +++ b/src/mash/CommandFind.h @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/CommandInfo.cpp b/src/mash/CommandInfo.cpp index 0151c66..8b8d179 100644 --- a/src/mash/CommandInfo.cpp +++ b/src/mash/CommandInfo.cpp @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/CommandInfo.h b/src/mash/CommandInfo.h index 1b2f39f..bd3a329 100644 --- a/src/mash/CommandInfo.h +++ b/src/mash/CommandInfo.h @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/CommandList.cpp b/src/mash/CommandList.cpp index 1bcaafd..93c559e 100644 --- a/src/mash/CommandList.cpp +++ b/src/mash/CommandList.cpp @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. @@ -36,12 +36,7 @@ void CommandList::print() cout << endl << "Mash version " << version << endl << endl; - cout << "Copyright © 2015, Battelle National Biodefense Institute (BNBI); all rights" << endl; - cout << "reserved. Authored by: Brian Ondov, Todd Treangen, and Adam Phillippy." << endl; - - cout << "This program is free software and comes with ABSOLUTELY NO WARRANTY, though you" << endl; - cout << "are welcome to redistribute it under certain conditions. Source code is" << endl; - cout << "available at github.com/marbl/mash. For more details, type 'mash --license'." << endl; + cout << "Type 'mash --license' for license and copyright information." << endl; cout << endl << "Usage:" << endl << endl; @@ -103,8 +98,19 @@ PURPOSE\n\ Mash is a fast sequence distance estimator that uses the MinHash\n\ algorithm and is designed to work with genomes and metagenomes in the\n\ form of assemblies or reads. It is implemented in C++ and is\n\ -distributed with KSeq (lh3lh3.users.sourceforge.net/kseq.shtml) and\n\ -MurmurHash3 (code.google.com/p/smhasher/wiki/MurmurHash3).\n\ +distributed with:\n\ +\n\ +KSeq\n\ + lh3lh3.users.sourceforge.net/kseq.shtml\n\ + MIT License\n\ +\n\ +MurmurHash3\n\ + code.google.com/p/smhasher/wiki/MurmurHash3\n\ + Public domain\n\ +\n\ +Open Bloom Filter\n\ + https://code.google.com/p/bloom/source/browse/trunk/bloom_filter.hpp\n\ + Common Public License\n\ \n"; #ifdef DIST_LICENSE cout << "\n\ @@ -118,8 +124,8 @@ cout << "\n\ COPYRIGHT LICENSE\n\ \n\ Copyright © 2015, Battelle National Biodefense Institute (BNBI);\n\ -all rights reserved. Authored by: Brian Ondov, Todd Treangen, and\n\ -Adam Phillippy\n\ +all rights reserved. Authored by: Brian Ondov, Todd Treangen,\n\ +Sergey Koren, and Adam Phillippy\n\ \n\ This Software was prepared for the Department of Homeland Security\n\ (DHS) by the Battelle National Biodefense Institute, LLC (BNBI) as\n\ diff --git a/src/mash/CommandList.h b/src/mash/CommandList.h index cd9924e..df1c877 100644 --- a/src/mash/CommandList.h +++ b/src/mash/CommandList.h @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/CommandPaste.cpp b/src/mash/CommandPaste.cpp index 64799c7..cc5e882 100644 --- a/src/mash/CommandPaste.cpp +++ b/src/mash/CommandPaste.cpp @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/CommandPaste.h b/src/mash/CommandPaste.h index 8f9c37c..31cbf46 100644 --- a/src/mash/CommandPaste.h +++ b/src/mash/CommandPaste.h @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/CommandSketch.cpp b/src/mash/CommandSketch.cpp index 98eb63d..a0753ce 100644 --- a/src/mash/CommandSketch.cpp +++ b/src/mash/CommandSketch.cpp @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/CommandSketch.h b/src/mash/CommandSketch.h index 250612b..4f7d547 100644 --- a/src/mash/CommandSketch.h +++ b/src/mash/CommandSketch.h @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/HashList.cpp b/src/mash/HashList.cpp index 1bb2674..ffd96a5 100644 --- a/src/mash/HashList.cpp +++ b/src/mash/HashList.cpp @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/HashList.h b/src/mash/HashList.h index bad1713..aa98151 100644 --- a/src/mash/HashList.h +++ b/src/mash/HashList.h @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/HashPriorityQueue.cpp b/src/mash/HashPriorityQueue.cpp index f4cfb15..aa64c62 100644 --- a/src/mash/HashPriorityQueue.cpp +++ b/src/mash/HashPriorityQueue.cpp @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/HashPriorityQueue.h b/src/mash/HashPriorityQueue.h index b37823f..e9f5b2e 100644 --- a/src/mash/HashPriorityQueue.h +++ b/src/mash/HashPriorityQueue.h @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/HashSet.cpp b/src/mash/HashSet.cpp index 02c9a90..e86a269 100644 --- a/src/mash/HashSet.cpp +++ b/src/mash/HashSet.cpp @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/HashSet.h b/src/mash/HashSet.h index c7701f7..fea5a9b 100644 --- a/src/mash/HashSet.h +++ b/src/mash/HashSet.h @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/Sketch.cpp b/src/mash/Sketch.cpp index cdb8953..d5f86d8 100644 --- a/src/mash/Sketch.cpp +++ b/src/mash/Sketch.cpp @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/Sketch.h b/src/mash/Sketch.h index 8deb0a2..93cf681 100644 --- a/src/mash/Sketch.h +++ b/src/mash/Sketch.h @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/ThreadPool.h b/src/mash/ThreadPool.h index 98440c7..6150885 100644 --- a/src/mash/ThreadPool.h +++ b/src/mash/ThreadPool.h @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/ThreadPool.hxx b/src/mash/ThreadPool.hxx index 94b1d40..a729184 100644 --- a/src/mash/ThreadPool.hxx +++ b/src/mash/ThreadPool.hxx @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/capnp/MinHash.capnp b/src/mash/capnp/MinHash.capnp index 4534ae3..6727124 100644 --- a/src/mash/capnp/MinHash.capnp +++ b/src/mash/capnp/MinHash.capnp @@ -1,6 +1,6 @@ # Copyright © 2015, Battelle National Biodefense Institute (BNBI); -# all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -# Adam Phillippy +# all rights reserved. Authored by: Brian Ondov, Todd Treangen, +# Sergey Koren, and Adam Phillippy # # See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/hash.cpp b/src/mash/hash.cpp index 73060f9..21c8db5 100644 --- a/src/mash/hash.cpp +++ b/src/mash/hash.cpp @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/hash.h b/src/mash/hash.h index 087920f..7c77c6d 100644 --- a/src/mash/hash.h +++ b/src/mash/hash.h @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/mash.cpp b/src/mash/mash.cpp index 5a03c02..f787b01 100644 --- a/src/mash/mash.cpp +++ b/src/mash/mash.cpp @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/memcpyLink.h b/src/mash/memcpyLink.h index 869756e..00be5f5 100644 --- a/src/mash/memcpyLink.h +++ b/src/mash/memcpyLink.h @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information. diff --git a/src/mash/version.h b/src/mash/version.h index f2ce1e9..e820352 100644 --- a/src/mash/version.h +++ b/src/mash/version.h @@ -1,6 +1,6 @@ // Copyright © 2015, Battelle National Biodefense Institute (BNBI); -// all rights reserved. Authored by: Brian Ondov, Todd Treangen, and -// Adam Phillippy +// all rights reserved. Authored by: Brian Ondov, Todd Treangen, +// Sergey Koren, and Adam Phillippy // // See the LICENSE.txt file included with this software for license information.