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config.yaml
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input: $input
output: $output
datadir: $datadir
batchsize: $batch_size
options:
overwrite: false
maxcores: $max_cores
progress: true
resources:
get_gfw_treecover:
args:
version: GFC-2023-v1.11
get_gfw_lossyear:
args:
version: GFC-2023-v1.11
get_biodiversity_intactness_index:
args:
path: ./raw/lbii.asc
get_teow:
get_irr_carbon:
get_vul_carbon:
get_man_carbon:
get_humanfootprint:
args:
years: [2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020]
get_worldpop:
args:
years: [2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020]
get_iucn:
args:
paths:
- $datadir/raw/Amphibians_SR_2023.tif
- $datadir/raw/Amphibians_THR_SR_2023.tif
- $datadir/raw/Birds_SR_2023.tif
- $datadir/raw/Birds_THR_SR_2023.tif
- $datadir/raw/Combined_SR_2023.tif
- $datadir/raw/Combined_THR_SR_2023.tif
- $datadir/raw/Mammals_SR_2023.tif
- $datadir/raw/Mammals_THR_SR_2023.tif
- $datadir/raw/Reptiles_SR_2023.tif
- $datadir/raw/Reptiles_THR_SR_2023.tif
get_key_biodiversity_areas:
args:
path: $datadir/raw/kbas.gpkg
get_gmw:
args:
years: [1996, 2007, 2008, 2009, 2010, 2015, 2016, 2017, 2018, 2019, 2020]
get_ipbes_biomes:
get_esalandcover:
args:
years: [2015, 2016, 2017, 2018, 2019]
indicators:
calc_landcover:
options:
chunksize: 500000
calc_mangroves_area:
options:
chunksize: 5000000
calc_ipbes_biomes:
options:
chunksize: 5000000
calc_treecover_area:
args:
years: [2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022, 2023]
min_cover: 10
min_size: 0.5
options:
chunksize: 50000
calc_biodiversity_intactness_index:
options:
chunksize: 50000
calc_biome:
options:
chunksize: 5000000
calc_irr_carbon:
args:
type: all
engine: exactextract
stats: [min, mean, median, sd, max, sum]
options:
chunksize: 500000
calc_vul_carbon:
args:
type: all
engine: exactextract
stats: [min, mean, median, sd, max, sum]
options:
chunksize: 500000
calc_man_carbon:
args:
type: all
engine: exactextract
stats: [min, mean, median, sd, max, sum]
options:
chunksize: 500000
calc_humanfootprint:
args:
stats: [min, mean, median, sd, max, sum]
engine: exactextract
options:
chunksize: 50000
calc_species_richness:
args:
stats: [min, mean, median, sd, max, sum]
engine: exactextract
calc_key_biodiversity_area:
options:
chunksize: 5000000
calc_population_count:
args:
stats: [min, mean, median, sd, max, sum]
engine: exactextract
options:
chunksize: 500000