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This repository has been archived by the owner on Jun 5, 2024. It is now read-only.
addParams does not update the parameters before they're used in the nextflow.config.
include { NFCORE_FETCHNGS } from "$projectDir/subworkflows/fetchngs/main" addParams(
outdir: params.fetchngs_outdir,
nf_core_pipeline: 'rnaseq'
)
This means that the execution reports which also use params.outdir use the default value, or the value from the -params-file/CLI. So this may not be a problem since it's for the entire workflow, but need to be careful with other params.
The text was updated successfully, but these errors were encountered:
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addParams
does not update the parameters before they're used in the nextflow.config.This means that the execution reports which also use
params.outdir
use the default value, or the value from the-params-file
/CLI. So this may not be a problem since it's for the entire workflow, but need to be careful with other params.The text was updated successfully, but these errors were encountered: