build.gradle

import groovy.json.JsonSlurper
import org.gradle.internal.os.OperatingSystem
import org.jabref.build.antlr.JabRefAntlrPlugin
import org.jabref.build.localization.LocalizationPlugin
import org.jabref.build.xjc.XjcPlugin
import org.jabref.build.xjc.XjcTask

// to update the gradle wrapper, execute
// ./gradlew wrapper --gradle-version=6.0 --distribution-type=bin

buildscript {
    repositories {
        mavenLocal()
        jcenter()
    }
}

plugins {
    id 'application'
    id "com.simonharrer.modernizer" version '1.8.0-1'
    id 'me.champeau.gradle.jmh' version '0.5.0'
    id 'com.github.ben-manes.versions' version '0.28.0'
    id 'org.javamodularity.moduleplugin' version '1.5.0'
    id 'org.openjfx.javafxplugin' version '0.0.8'
    id 'org.beryx.jlink' version '2.17.4'

    // nicer test outputs during running and completion
    id 'com.adarshr.test-logger' version '2.0.0'
}

gradle.startParameter.showStacktrace = org.gradle.api.logging.configuration.ShowStacktrace.ALWAYS

apply plugin: 'java'
apply plugin: 'application'
apply plugin: 'project-report'
apply plugin: 'jacoco'
apply plugin: 'me.champeau.gradle.jmh'
apply plugin: 'checkstyle'
apply plugin: JabRefAntlrPlugin
apply plugin: XjcPlugin
apply plugin: LocalizationPlugin

apply from: 'eclipse.gradle'

group = "org.jabref"
version = project.findProperty('projVersion') ?: '100.0.0'

java {
    sourceCompatibility = JavaVersion.VERSION_14
    targetCompatibility = JavaVersion.VERSION_14
}

application {
    mainClassName = "$moduleName/org.jabref.JabRefLauncher"
}

// TODO: Ugly workaround to temporarily ignore build errors to dependencies of latex2unicode
// These should be removed, as well as the files in the lib folder, as soon as they have valid module names
patchModules.config = [
        "test=fastparse_2.12-1.0.0.jar",
        "test2=fastparse-utils_2.12-1.0.0.jar",
        "test3=sourcecode_2.12-0.1.4.jar"
]

// These are the Java version requirements we will check on each start of JabRef
ext.minRequiredJavaVersion = "1.8.0_171"
ext.allowJava9 = true

sourceSets {
    main {
        java {
            srcDirs = ["src/main/java", "src/main/gen"]
        }

        resources {
            srcDirs = ["src/main/java", "src/main/resources"]
        }
    }
    test {
        java {
            srcDirs = ["src/test/java"]
        }
        resources {
            srcDirs = ["src/test/resources"]
        }
    }
}

repositories {
    jcenter()
    maven { url 'https://oss.sonatype.org/content/groups/public' }
    maven { url 'https://repository.apache.org/snapshots' }
}

configurations {
    libreoffice

    // TODO: Remove the following workaround for split error messages such as
    // error: module java.xml.bind reads package javax.annotation from both jsr305 and java.annotation
    compile {
        exclude group: "javax.activation"
    }
}

javafx {
    version = "14"
    modules = [ 'javafx.controls', 'javafx.fxml', 'javafx.web', 'javafx.swing' ]
}

dependencies {
    // Include all jar-files in the 'lib' folder as dependencies
    implementation fileTree(dir: 'lib', includes: ['*.jar'])

    implementation 'org.apache.pdfbox:pdfbox:2.0.19'
    implementation 'org.apache.pdfbox:fontbox:2.0.19'
    implementation 'org.apache.pdfbox:xmpbox:2.0.19'

    implementation group: 'org.apache.commons', name: 'commons-csv', version: '1.8'

    implementation group: 'org.apache.tika', name: 'tika-core', version: '1.24'

    // required for reading write-protected PDFs - see https://github.com/JabRef/jabref/pull/942#issuecomment-209252635
    implementation 'org.bouncycastle:bcprov-jdk15on:1.65'

    implementation 'commons-cli:commons-cli:1.4'

    // For Java 9+ compatibility, we include a bundled version of the libreoffice libraries
    // See https://bugs.documentfoundation.org/show_bug.cgi?id=117331#c8 for background information
    // Use the task bundleLibreOffice to update the bundled jar
    // DO NOT CHANGE THE libreoffice PREFIX
    libreoffice 'org.libreoffice:juh:6.3.2'
    libreoffice 'org.libreoffice:jurt:6.3.2'
    libreoffice 'org.libreoffice:ridl:6.3.2'
    libreoffice 'org.libreoffice:unoil:6.3.2'

    implementation 'io.github.java-diff-utils:java-diff-utils:4.5'
    implementation 'info.debatty:java-string-similarity:1.2.1'

    antlr3 'org.antlr:antlr:3.5.2'
    implementation 'org.antlr:antlr-runtime:3.5.2'

    antlr4 'org.antlr:antlr4:4.8-1'
    implementation 'org.antlr:antlr4-runtime:4.8-1'

    implementation group: 'org.mariadb.jdbc', name: 'mariadb-java-client', version: '2.6.0'

    implementation 'org.postgresql:postgresql:42.2.12'

    implementation ('com.oracle.ojdbc:ojdbc10:19.3.0.0') {
        // causing module issues
        exclude module: 'oraclepki'
    }

    implementation ('com.google.guava:guava:28.2-jre') {
        // TODO: Remove this as soon as https://github.com/google/guava/issues/2960 is fixed
        exclude module: "jsr305"
    }

    implementation group: 'jakarta.annotation', name: 'jakarta.annotation-api', version: '1.3.5'

    // JavaFX stuff
    implementation 'de.jensd:fontawesomefx-commons:11.0'
    implementation 'de.jensd:fontawesomefx-materialdesignfont:1.7.22-11'
    implementation 'de.saxsys:mvvmfx-validation:1.9.0-SNAPSHOT'
    implementation 'de.saxsys:mvvmfx:1.8.0'
    implementation 'org.fxmisc.easybind:easybind:1.0.3'
    implementation 'org.fxmisc.flowless:flowless:0.6.1'
    implementation 'org.fxmisc.richtext:richtextfx:0.10.4'
    implementation group: 'org.glassfish.hk2.external', name: 'jakarta.inject', version: '2.6.1'
    implementation 'com.jfoenix:jfoenix:9.0.9'
    implementation 'org.controlsfx:controlsfx:11.0.1'

    implementation 'org.jsoup:jsoup:1.13.1'
    implementation 'com.konghq:unirest-java:3.7.01'

    implementation 'org.slf4j:slf4j-api:2.0.0-alpha1'
    implementation group: 'org.apache.logging.log4j', name: 'log4j-jcl', version: '3.0.0-SNAPSHOT'
    implementation group: 'org.apache.logging.log4j', name: 'log4j-slf4j18-impl', version: '3.0.0-SNAPSHOT'
    implementation group: 'org.apache.logging.log4j', name: 'log4j-plugins', version: '3.0.0-SNAPSHOT'
    implementation group: 'org.apache.logging.log4j', name: 'log4j-api', version: '3.0.0-SNAPSHOT'
    implementation group: 'org.apache.logging.log4j', name: 'log4j-core', version: '3.0.0-SNAPSHOT'
    annotationProcessor group: 'org.apache.logging.log4j', name: 'log4j-core', version: '3.0.0-SNAPSHOT'

    implementation 'de.undercouch:citeproc-java:2.1.0-SNAPSHOT'

    implementation group: 'jakarta.activation', name: 'jakarta.activation-api', version: '1.2.1'
    implementation group: 'jakarta.xml.bind', name: 'jakarta.xml.bind-api', version: '2.3.2'
    implementation group: 'org.glassfish.jaxb', name: 'jaxb-runtime', version: '2.3.2'

    implementation ('com.github.tomtung:latex2unicode_2.12:0.2.6') {
        exclude module: 'fastparse_2.12'
    }

    implementation group: 'com.microsoft.azure', name: 'applicationinsights-core', version: '2.4.1'
    implementation (group: 'com.microsoft.azure', name: 'applicationinsights-logging-log4j2', version: '2.4.1') {
        exclude module: "log4j-core"
    }

    implementation 'com.vladsch.flexmark:flexmark:0.61.0'
    implementation 'com.vladsch.flexmark:flexmark-ext-gfm-strikethrough:0.61.0'
    implementation 'com.vladsch.flexmark:flexmark-ext-gfm-tasklist:0.61.0'

    testImplementation 'io.github.classgraph:classgraph:4.8.68'
    testImplementation 'org.junit.jupiter:junit-jupiter:5.6.1'
    testRuntimeOnly 'org.junit.vintage:junit-vintage-engine:5.6.1'
    testImplementation 'org.junit.platform:junit-platform-launcher:1.6.1'

    testImplementation 'net.bytebuddy:byte-buddy-parent:1.10.9'
    testRuntime group: 'org.apache.logging.log4j', name: 'log4j-core', version: '3.0.0-SNAPSHOT'
    testRuntime group: 'org.apache.logging.log4j', name: 'log4j-jul', version: '3.0.0-SNAPSHOT'
    testImplementation 'org.mockito:mockito-core:3.3.3'
    testImplementation 'org.xmlunit:xmlunit-core:2.6.4'
    testImplementation 'org.xmlunit:xmlunit-matchers:2.6.4'
    testImplementation 'com.tngtech.archunit:archunit-junit5-api:0.13.1'
    testImplementation "org.testfx:testfx-core:4.0.17-alpha-SNAPSHOT"
    testImplementation "org.testfx:testfx-junit5:4.0.17-alpha-SNAPSHOT"
    testImplementation "org.hamcrest:hamcrest-library:2.2"

    checkstyle 'com.puppycrawl.tools:checkstyle:8.31'
    xjc group: 'org.glassfish.jaxb', name: 'jaxb-xjc', version: '2.3.2'
    jython 'org.python:jython-standalone:2.7.2'
}

dependencyUpdates {
    outputFormatter = "json"
}

// We have some dependencies which cannot be updated due to various reasons.
dependencyUpdates.resolutionStrategy = {
    componentSelection { rules ->
        rules.all { ComponentSelection selection ->
            boolean rejected = ['alpha', 'snapshot', 'beta', 'rc', 'cr', 'm', 'preview', 'b', 'ea'].any { qualifier ->
                selection.candidate.version ==~ /(?i).*[.-]$qualifier[.\d-+]*/
            }
            if (rejected) {
                selection.reject('Release candidate')
            }
        }
        rules.withModule("de.jensd:fontawesomefx-materialdesignfont") { ComponentSelection selection ->
            if (selection.candidate.version ==~ /2.0.26.*/) {
                selection.reject('1.7.22-11 is actually newer (strange version system)')
            }
        }
        rules.withModule("org.javamodularity.moduleplugin:org.javamodularity.moduleplugin.gradle.plugin") { ComponentSelection selection ->
            if (selection.candidate.version ==~ /1.6.0/) {
                selection.reject("Does not work due to bug, see https://github.com/JabRef/jabref/pull/5270")
            }
        }
        rules.withModule("com.microsoft.azure:applicationinsights-core") { ComponentSelection selection ->
            if (selection.candidate.version ==~ /2.5.0/ || selection.candidate.version ==~ /2.5.1/) {
                selection.reject("Does not work due to bug, see https://github.com/JabRef/jabref/pull/5596")
            }
        }
        rules.withModule("com.microsoft.azure:applicationinsights-logging-log4j2") { ComponentSelection selection ->
            if (selection.candidate.version ==~ /2.5.0/ || selection.candidate.version ==~ /2.5.1/) {
                selection.reject("Does not work due to bug, see https://github.com/JabRef/jabref/pull/5596")
            }
        }
    }
}

task checkOutdatedDependencies(dependsOn: dependencyUpdates) {
    doLast {
        def dependencyReport = new JsonSlurper().parseText(new File("build/dependencyUpdates/report.json").text)
        assert dependencyReport.outdated.count == 0: "There are outdated dependencies in build.gradle!\n Run ./gradlew dependencyUpdates to see which"
    }
}

clean {
    delete "src/main/gen"
}

processResources {
    filteringCharset = 'UTF-8'

    filesMatching("build.properties") {
        expand(version: project.findProperty('projVersionInfo') ?: '100.0.0',
                "year": String.valueOf(Calendar.getInstance().get(Calendar.YEAR)),
                "authors": new File('AUTHORS').readLines().findAll { !it.startsWith("#") }.join(", "),
                "developers": new File('DEVELOPERS').readLines().findAll { !it.startsWith("#") }.join(", "),
                "azureInstrumentationKey": System.getenv('AzureInstrumentationKey'),
                "springerNatureAPIKey": System.getenv('SpringerNatureAPIKey'),
                "minRequiredJavaVersion": minRequiredJavaVersion,
                "allowJava9": allowJava9

        )
        filteringCharset = 'UTF-8'
    }

    filesMatching("resource/**/meta.xml") {
        expand version: project.version
    }
}

task generateSource(dependsOn: ["generateBstGrammarSource",
                                "generateSearchGrammarSource",
                                "generateMedlineSource",
                                "generateBibtexmlSource",
                                "generateEndnoteSource",
                                "generateModsSource"]) {
    group = 'JabRef'
    description 'Generates all Java source files.'
}

task generateBstGrammarSource(type: org.jabref.build.antlr.AntlrTask) {
    group = "JabRef"
    description = 'Generates BstLexer.java and BstParser.java from the Bst.g grammar file using antlr3.'

    antlr = ANTLR3
    inputFile = 'src/main/antlr3/org/jabref/bst/Bst.g'
    outputDir = 'src/main/gen/org/jabref/logic/bst/'
}

task generateSearchGrammarSource(type: org.jabref.build.antlr.AntlrTask) {
    group = 'JabRef'
    description = "Generates java files for Search.g antlr4."

    antlr = ANTLR4
    inputFile = "src/main/antlr4/org/jabref/search/Search.g4"
    outputDir = "src/main/gen/org/jabref/search"
    javaPackage = "org.jabref.search"
}

task generateMedlineSource(type: XjcTask) {
    group = 'JabRef'
    description = "Generates java files for the medline importer."

    schemaFile = "src/main/resources/xjc/medline/medline.xsd"
    outputDirectory = "src/main/gen/"
    javaPackage = "org.jabref.logic.importer.fileformat.medline"
}

task generateBibtexmlSource(type: XjcTask) {
    group = 'JabRef'
    description = "Generates java files for the bibtexml importer."

    schemaFile = "src/main/resources/xjc/bibtexml/bibtexml.xsd"
    outputDirectory = "src/main/gen"
    javaPackage = "org.jabref.logic.importer.fileformat.bibtexml"
}

task generateEndnoteSource(type: XjcTask) {
    group = 'JabRef'
    description = "Generates java files for the endnote importer."

    schemaFile = "src/main/resources/xjc/endnote/endnote.xsd"
    outputDirectory = "src/main/gen/"
    javaPackage = "org.jabref.logic.importer.fileformat.endnote"
}

task generateModsSource(type: XjcTask) {
    group = 'JabRef'
    description = "Generates java files for the mods importer."

    schemaFile = "src/main/resources/xjc/mods/mods-3-7.xsd"
    bindingFile = "src/main/resources/xjc/mods/mods-binding.xjb"
    outputDirectory = "src/main/gen/"
    javaPackage = "org.jabref.logic.importer.fileformat.mods"
    arguments = '-npa'
}

tasks.withType(JavaCompile) {
    options.encoding = 'UTF-8'
}

compileJava {
    options.compilerArgs << "-Xlint:none"
    dependsOn "generateSource"

    moduleOptions {
        // TODO: Remove access to internal api
        addExports = [
                'javafx.controls/com.sun.javafx.scene.control' : 'org.jabref',
                'org.controlsfx.controls/impl.org.controlsfx.skin' : 'org.jabref'
        ]
    }
}

run {
    // TODO: Remove access to internal api
    jvmArgs '--add-exports', 'javafx.controls/com.sun.javafx.scene.control=org.jabref',
            '--add-exports', 'org.controlsfx.controls/impl.org.controlsfx.skin=org.jabref',
            '--add-opens', 'javafx.controls/javafx.scene.control=org.jabref',
            '--add-opens', 'org.controlsfx.controls/org.controlsfx.control.textfield=org.jabref',
            '--add-opens', 'javafx.controls/com.sun.javafx.scene.control=org.jabref',
            // Not sure why we need to restate the controlfx exports
            // Taken from here: https://github.com/controlsfx/controlsfx/blob/9.0.0/build.gradle#L1
            "--add-exports", "javafx.graphics/com.sun.javafx.scene=org.controlsfx.controls",
            "--add-exports", "javafx.graphics/com.sun.javafx.scene.traversal=org.controlsfx.controls",
            "--add-exports", "javafx.graphics/com.sun.javafx.css=org.controlsfx.controls",
            "--add-exports", "javafx.controls/com.sun.javafx.scene.control.behavior=org.controlsfx.controls",
            "--add-exports", "javafx.controls/com.sun.javafx.scene.control=org.controlsfx.controls",
            "--add-exports", "javafx.controls/com.sun.javafx.scene.control.inputmap=org.controlsfx.controls",
            "--add-exports", "javafx.base/com.sun.javafx.event=org.controlsfx.controls",
            "--add-exports", "javafx.base/com.sun.javafx.collections=org.controlsfx.controls",
            "--add-exports", "javafx.base/com.sun.javafx.runtime=org.controlsfx.controls",
            "--add-exports", "javafx.web/com.sun.webkit=org.controlsfx.controls",
            "--add-exports", "javafx.graphics/com.sun.javafx.css=org.controlsfx.controls",
            "--add-opens", "javafx.controls/javafx.scene.control.skin=org.controlsfx.controls",
            "--add-opens", "javafx.graphics/javafx.scene=org.controlsfx.controls",
            "--add-exports", "javafx.controls/com.sun.javafx.scene.control.behavior=com.jfoenix",
            "--add-opens", "javafx.controls/com.sun.javafx.scene.control.behavior=com.jfoenix",
            "--add-opens", "javafx.base/com.sun.javafx.binding=com.jfoenix",
            "--add-opens", "javafx.graphics/com.sun.javafx.stage=com.jfoenix",
            "--add-opens", "javafx.base/com.sun.javafx.event=com.jfoenix",
            '--add-exports', 'com.oracle.truffle.regex/com.oracle.truffle.regex=org.graalvm.truffle'

    // TODO: The following code should have the same affect as the above one, but doesn't work for some reason
    // https://github.com/java9-modularity/gradle-modules-plugin/issues/89
    moduleOptions {
        addExports = [
                'javafx.controls/com.sun.javafx.scene.control' : 'org.jabref',
                'org.controlsfx.controls/impl.org.controlsfx.skin' : 'org.jabref',
                'com.oracle.truffle.regex/com.oracle.truffle.regex' : 'org.graalvm.truffle'
        ]

        addOpens = [
                'javafx.controls/javafx.scene.control' : 'org.jabref',
                'org.controlsfx.controls/org.controlsfx.control.textfield' : 'org.jabref'
        ]
    }
}

javadoc {
    options {
        encoding = 'UTF-8'
        version = true
        author = true
    }
}

localization.script = 'scripts/syncLang.py'

test {
    useJUnitPlatform {
        excludeTags 'DatabaseTest', 'FetcherTest', 'GUITest'
    }

    testLogging {
        // set options for log level LIFECYCLE
        // for debugging tests: add "STANDARD_OUT", "STANDARD_ERROR"
        events = ["FAILED"]
        exceptionFormat "full"
    }
}

testlogger {
    showPassed false
}

task databaseTest(type: Test) {
    useJUnitPlatform {
        includeTags 'DatabaseTest'
    }

    testLogging {
        // set options for log level LIFECYCLE
        events = ["FAILED"]
        exceptionFormat "full"
    }
}

task fetcherTest(type: Test) {
    useJUnitPlatform {
        includeTags 'FetcherTest'
    }

    testLogging {
        // set options for log level LIFECYCLE
        events = ["FAILED"]
        exceptionFormat "full"
    }
}

task guiTest(type: Test) {
    useJUnitPlatform {
        includeTags 'GUITest'
    }

    testLogging {
        // set options for log level LIFECYCLE
        events = ["FAILED"]
        exceptionFormat "full"
    }
}

// Test result tasks
task copyTestResources(type: Copy) {
    from "${projectDir}/src/test/resources"
    into "${buildDir}/classes/test"
}
processTestResources.dependsOn copyTestResources

tasks.withType(Test) {
    reports.html.destination = file("${reporting.baseDir}/${name}")
}

task jacocoMergePrep() {
    doFirst {
        // Ignore failures of tests
        tasks.withType(Test) {
            ignoreFailures = true
        }
    }
}
test.mustRunAfter jacocoMergePrep
databaseTest.mustRunAfter jacocoMergePrep
fetcherTest.mustRunAfter jacocoMergePrep

task jacocoMerge(type: JacocoMerge) {
    executionData files(
            "$buildDir/jacoco/test.exec",
            "$buildDir/jacoco/databaseTest.exec",
            "$buildDir/jacoco/fetcherTest.exec").filter { it.exists() }
    dependsOn jacocoMergePrep, test, databaseTest, fetcherTest
}

jacocoTestReport {
    executionData jacocoMerge.destinationFile
    dependsOn jacocoMerge

    reports {
        csv.enabled = true
        html.enabled = true
        xml.enabled = true // coveralls plugin depends on xml format report
    }
}

// Code quality tasks
checkstyle {
    // will only run when called explicitly from the command line
    sourceSets = []
}

// Release tasks
task deleteInstallerTemp(type: Delete) {
    delete "$buildDir/installer"
}

jpackage.dependsOn deleteInstallerTemp
jlink {
    options = ['--strip-debug','--compress', '2', '--no-header-files', '--no-man-pages']
    launcher {
        name = 'JabRef'
    }

    addOptions("--bind-services")

    // TODO: Remove the following as soon as the dependencies are fixed (upstream)
    // forceMerge is usually needed when some non-modular artifacts in the dependency graph use code that was previously part of the JDK
    // but it was removed in the newer releases.
    // The pom.xml associated with such a non-modular artifact does not mention that the artifact depends on the removed code
    // (because the artifact was published when this code was still available in the JDK).
    forceMerge "javafx"
    forceMerge "controlsfx", "bcprov", "jaxb", "istack", "stax", "log4j"

    // TODO: Remove the following correction to the merged module
    // The module descriptor automatically generated by the plugin for the merged module contained some invalid entries.
    // Execute ./gradlew suggestMergedModuleInfo and include the suggested directives here.
    mergedModule {
        requires 'java.xml'
        requires 'com.sun.xml.txw2'
        requires 'java.desktop'
        requires 'org.objectweb.asm'
        requires 'jdk.jfr'
        requires 'jdk.unsupported'
        requires 'com.google.gson'
        requires 'java.management'
        requires 'java.naming'
        requires 'java.security.sasl'
        requires 'com.sun.xml.fastinfoset'
        requires 'jdk.security.jgss'
        requires 'java.logging'
        requires 'jdk.xml.dom'
        requires 'java.sql'
        requires 'java.rmi'
        requires 'java.security.jgss'
        requires 'com.oracle.truffle.regex'
        requires 'jdk.jsobject'
        requires 'jdk.management'
        requires 'jdk.unsupported.desktop'
        requires 'org.objectweb.asm.util'
        requires 'java.scripting'
        requires 'org.objectweb.asm.commons'
        requires 'org.graalvm.truffle'
        requires 'java.datatransfer'
        requires 'java.compiler'
        requires 'java.sql.rowset'
        requires 'java.transaction.xa'
        requires 'org.graalvm.sdk'
        requires 'org.slf4j'
        uses 'org.apache.logging.log4j.util.PropertySource'
        uses 'org.apache.logging.log4j.core.util.WatchEventService'
        uses 'org.apache.logging.log4j.plugins.processor.PluginService'
        uses 'org.controlsfx.glyphfont.GlyphFont'
        uses 'com.airhacks.afterburner.views.ResourceLocator'
        uses 'com.oracle.truffle.js.runtime.Evaluator'
        uses 'org.apache.logging.log4j.message.ThreadDumpMessage.ThreadInfoFactory'
        uses 'com.airhacks.afterburner.injection.PresenterFactory'
        uses 'com.oracle.truffle.js.runtime.builtins.JSFunctionLookup'
        uses 'org.apache.logging.log4j.spi.Provider'
        uses 'org.mariadb.jdbc.credential.CredentialPlugin'
        uses 'org.mariadb.jdbc.tls.TlsSocketPlugin'
        uses 'org.mariadb.jdbc.LocalInfileInterceptor'
        uses 'javax.xml.bind.JAXBContextFactory'
        provides 'javax.annotation.processing.Processor' with 'org.apache.logging.log4j.plugins.processor.PluginProcessor'
        provides 'org.controlsfx.glyphfont.GlyphFont' with 'org.controlsfx.glyphfont.FontAwesome'
        provides 'org.apache.logging.log4j.message.ThreadDumpMessage.ThreadInfoFactory' with 'org.apache.logging.log4j.core.message.ExtendedThreadInfoFactory'
        provides 'org.mariadb.jdbc.tls.TlsSocketPlugin' with 'org.mariadb.jdbc.internal.protocol.tls.DefaultTlsSocketPlugin'
        provides 'com.microsoft.applicationinsights.core.dependencies.io.grpc.ServerProvider' with 'com.microsoft.applicationinsights.core.dependencies.io.grpc.netty.shaded.io.grpc.netty.NettyServerProvider'
        provides 'com.oracle.truffle.js.runtime.Evaluator' with 'com.oracle.truffle.js.parser.GraalJSEvaluator'
        provides 'com.microsoft.applicationinsights.core.dependencies.io.grpc.NameResolverProvider' with 'com.microsoft.applicationinsights.core.dependencies.io.grpc.internal.DnsNameResolverProvider'
        provides 'org.apache.logging.log4j.util.PropertySource' with 'org.apache.logging.log4j.util.EnvironmentPropertySource',
                'org.apache.logging.log4j.util.SystemPropertiesPropertySource'
        provides 'java.sql.Driver' with 'org.postgresql.Driver'
        provides 'org.apache.logging.log4j.plugins.processor.PluginService' with 'org.apache.logging.log4j.plugins.convert.plugins.Log4jPlugins'
        provides 'org.mariadb.jdbc.authentication.AuthenticationPlugin' with 'org.mariadb.jdbc.internal.com.send.authentication.CachingSha2PasswordPlugin',
                'org.mariadb.jdbc.internal.com.send.authentication.ClearPasswordPlugin',
                'org.mariadb.jdbc.internal.com.send.authentication.Ed25519PasswordPlugin',
                'org.mariadb.jdbc.internal.com.send.authentication.NativePasswordPlugin',
                'org.mariadb.jdbc.internal.com.send.authentication.OldPasswordPlugin',
                'org.mariadb.jdbc.internal.com.send.authentication.SendGssApiAuthPacket',
                'org.mariadb.jdbc.internal.com.send.authentication.SendPamAuthPacket',
                'org.mariadb.jdbc.internal.com.send.authentication.Sha256PasswordPlugin'
        provides 'org.mariadb.jdbc.credential.CredentialPlugin' with 'org.mariadb.jdbc.credential.aws.AwsIamCredentialPlugin',
                'org.mariadb.jdbc.credential.env.EnvCredentialPlugin',
                'org.mariadb.jdbc.credential.system.PropertiesCredentialPlugin'
        provides 'org.apache.commons.logging.LogFactory' with 'org.apache.logging.log4j.jcl.LogFactoryImpl'
        provides 'org.slf4j.spi.SLF4JServiceProvider' with 'org.apache.logging.slf4j.SLF4JServiceProvider'
        provides 'org.apache.logging.log4j.spi.Provider' with 'org.apache.logging.log4j.core.impl.Log4jProvider'
        provides 'java.security.Provider' with 'org.bouncycastle.jce.provider.BouncyCastleProvider',
                'org.bouncycastle.pqc.jcajce.provider.BouncyCastlePQCProvider'
        provides 'com.microsoft.applicationinsights.core.dependencies.io.grpc.ManagedChannelProvider' with 'com.microsoft.applicationinsights.core.dependencies.io.grpc.netty.shaded.io.grpc.netty.NettyChannelProvider'
        provides 'com.oracle.truffle.js.runtime.builtins.JSFunctionLookup' with 'com.oracle.truffle.js.builtins.JSDefaultBuiltinLookup'
    }

    jpackage {
        // In order for this to work, you need to dowload jpackage from https://jdk.java.net/jpackage/
        // and put the path to the jdk-14 folder in the environment variable BADASS_JLINK_JPACKAGE_HOME
        outputDir = "distribution"

        if (OperatingSystem.current().isWindows()) {
            // This requires WiX to be installed: https://github.com/wixtoolset/wix3/releases
            installerType = "msi"
            imageOptions = [
                    '--icon', "${projectDir}/src/main/resources/icons/jabref.ico",
            ]
            installerOptions = [
                    '--vendor', 'JabRef',
                    '--app-version', "${project.version}",
                    '--win-upgrade-uuid', 'd636b4ee-6f10-451e-bf57-c89656780e36',
                    '--win-dir-chooser',
                    '--win-shortcut',
                    '--temp', "$buildDir/installer",
                    '--resource-dir', "${projectDir}/buildres/windows",
                    '--file-associations', "${projectDir}/buildres/windows/bibtexAssociations.properties"
            ]
        }

        if (OperatingSystem.current().isLinux()) {
            imageOptions = [
                    '--icon', "${projectDir}/src/main/resources/icons/JabRef-icon-64.png",
            ]
            installerOptions = [
                    '--vendor', 'JabRef',
                    '--app-version', "${project.version}",
                    // '--temp', "$buildDir/installer",
                    '--resource-dir', "${projectDir}/buildres/linux",
                    '--linux-menu-group', 'Office;',
                    '--linux-rpm-license-type', 'MIT',
                    // '--license-file', "${projectDir}/LICENSE.md",
                    '--description', 'JabRef is an open source bibliography reference manager. The native file format used by JabRef is BibTeX, the standard LaTeX bibliography format.',
                    '--linux-shortcut',
                    '--file-associations', "${projectDir}/buildres/linux/bibtexAssociations.properties"
            ]
        }

        if (OperatingSystem.current().isMacOsX()) {
            imageOptions = [
                    '--icon', "${projectDir}/src/main/resources/icons/jabref.icns",
            ]
            installerOptions = [
                    '--vendor', 'JabRef',
                    '--app-version', "${project.version}",
                    '--file-associations', "${projectDir}/buildres/mac/bibtexAssociations.properties"
            ]
        }
    }
}

if (OperatingSystem.current().isWindows()) {
    tasks.jpackageImage.doLast {
        copy {
            from("${projectDir}/buildres/windows") {
                include "jabref.json", "jabref-chrome.json", "JabRefHost.bat", "JabRefHost.ps1"
            }
            into "$buildDir/distribution/JabRef"
        }
    }
}

if (OperatingSystem.current().isLinux()) {
    tasks.jpackageImage.doLast {
        copy {
            from("${projectDir}/buildres/linux") {
                include "native-messaging-host/**", "jabrefHost.py"
            }
            into "$buildDir/distribution/JabRef/lib"
        }
    }
}

// Delete unnecessary folder in application image
// TODO: Remove this workaround as soon as https://github.com/beryx/badass-jlink-plugin/issues/51 is fixed
task deleteModsFolder(type: Delete) {
    delete "$buildDir/distribution/JabRef/app/mods"
}
deleteModsFolder.shouldRunAfter jpackageImage

jmh {
    warmupIterations = 5
    iterations = 10
    fork = 2
}

// Source: https://stackoverflow.com/a/44168582/873282
task downloadDependencies {
    description "Pre-downloads *most* dependencies"
    doLast {
        configurations.getAsMap().each { name, config ->
            println "Retrieving dependencies for $name"
            try {
                config.files
            } catch (e) {
                // some cannot be resolved, just log them
                project.logger.info e.message
            }
        }
    }
}

task bundleLibreOffice(type: Jar) {
    from configurations.libreoffice.collect { zipTree it }

    manifest {
        attributes 'Automatic-Module-Name': 'org.jabref.thirdparty.libreoffice'
    }

    destinationDir = file('lib')
    archiveName = 'libreoffice.jar'
}