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transforms.rst

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github_url:https://github.com/Project-MONAI/MONAI

Transforms

Generic Interfaces

.. automodule:: monai.transforms

.. currentmodule:: monai.transforms

Transform

.. autoclass:: Transform
    :members:
    :special-members: __call__

MapTransform

.. autoclass:: MapTransform
    :members:
    :special-members: __call__

Randomizable

.. autoclass:: Randomizable
    :members:

RandomizableTransform

.. autoclass:: RandomizableTransform
    :members:

Compose

.. autoclass:: Compose
    :members:
    :special-members: __call__

InvertibleTransform

.. autoclass:: InvertibleTransform
    :members:

BatchInverseTransform

.. autoclass:: BatchInverseTransform
    :members:

Decollated

.. autoclass:: Decollated
    :members:

Vanilla Transforms

Crop and Pad

SpatialPad
.. autoclass:: SpatialPad
    :members:
    :special-members: __call__
BorderPad
.. autoclass:: BorderPad
    :members:
    :special-members: __call__
DivisiblePad
.. autoclass:: DivisiblePad
    :members:
    :special-members: __call__
SpatialCrop
.. autoclass:: SpatialCrop
    :members:
    :special-members: __call__
CenterSpatialCrop
.. autoclass:: CenterSpatialCrop
    :members:
    :special-members: __call__
RandSpatialCrop
.. autoclass:: RandSpatialCrop
    :members:
    :special-members: __call__
RandSpatialCropSamples
.. autoclass:: RandSpatialCropSamples
    :members:
    :special-members: __call__
CropForeground
.. autoclass:: CropForeground
    :members:
    :special-members: __call__
RandWeightedCrop
.. autoclass:: RandWeightedCrop
    :members:
    :special-members: __call__
RandCropByPosNegLabel
.. autoclass:: RandCropByPosNegLabel
    :members:
    :special-members: __call__
ResizeWithPadOrCrop
.. autoclass:: ResizeWithPadOrCrop
    :members:
    :special-members: __call__
BoundingRect
.. autoclass:: BoundingRect
    :members:
    :special-members: __call__
RandScaleCrop
.. autoclass:: RandScaleCrop
    :members:
    :special-members: __call__
CenterScaleCrop
.. autoclass:: CenterScaleCrop
    :members:
    :special-members: __call__

Intensity

RandGaussianNoise
.. autoclass:: RandGaussianNoise
    :members:
    :special-members: __call__
ShiftIntensity
.. autoclass:: ShiftIntensity
    :members:
    :special-members: __call__
RandShiftIntensity
.. autoclass:: RandShiftIntensity
    :members:
    :special-members: __call__
StdShiftIntensity
.. autoclass:: StdShiftIntensity
    :members:
    :special-members: __call__
RandStdShiftIntensity
.. autoclass:: RandStdShiftIntensity
    :members:
    :special-members: __call__
RandBiasField
.. autoclass:: RandBiasField
    :members:
    :special-members: __call__
ScaleIntensity
.. autoclass:: ScaleIntensity
    :members:
    :special-members: __call__
RandScaleIntensity
.. autoclass:: RandScaleIntensity
    :members:
    :special-members: __call__
NormalizeIntensity
.. autoclass:: NormalizeIntensity
    :members:
    :special-members: __call__
ThresholdIntensity
.. autoclass:: ThresholdIntensity
    :members:
    :special-members: __call__
ScaleIntensityRange
.. autoclass:: ScaleIntensityRange
    :members:
    :special-members: __call__
ScaleIntensityRangePercentiles
.. autoclass:: ScaleIntensityRangePercentiles
    :members:
    :special-members: __call__
AdjustContrast
.. autoclass:: AdjustContrast
    :members:
    :special-members: __call__
RandAdjustContrast
.. autoclass:: RandAdjustContrast
    :members:
    :special-members: __call__
MaskIntensity
.. autoclass:: MaskIntensity
    :members:
    :special-members: __call__
SavitzkyGolaySmooth
.. autoclass:: SavitzkyGolaySmooth
    :members:
    :special-members: __call__
GaussianSmooth
.. autoclass:: GaussianSmooth
    :members:
    :special-members: __call__
RandGaussianSmooth
.. autoclass:: RandGaussianSmooth
    :members:
    :special-members: __call__
GaussianSharpen
.. autoclass:: GaussianSharpen
    :members:
    :special-members: __call__
RandGaussianSharpen
.. autoclass:: RandGaussianSharpen
    :members:
    :special-members: __call__
RandHistogramShift
.. autoclass:: RandHistogramShift
    :members:
    :special-members: __call__
DetectEnvelope
.. autoclass:: DetectEnvelope
    :members:
    :special-members: __call__
GibbsNoise
.. autoclass:: GibbsNoise
    :members:
    :special-members: __call__
RandGibbsNoise
.. autoclass:: RandGibbsNoise
    :members:
    :special-members: __call__
KSpaceSpikeNoise
.. autoclass:: KSpaceSpikeNoise
    :members:
    :special-members: __call__
RandKSpaceSpikeNoise
.. autoclass:: RandKSpaceSpikeNoise
    :members:
    :special-members: __call__

IO

LoadImage
.. autoclass:: LoadImage
    :members:
    :special-members: __call__
SaveImage
.. autoclass:: SaveImage
    :members:
    :special-members: __call__

Post-processing

Activations
.. autoclass:: Activations
    :members:
    :special-members: __call__
AsDiscrete
.. autoclass:: AsDiscrete
    :members:
    :special-members: __call__
KeepLargestConnectedComponent
.. autoclass:: KeepLargestConnectedComponent
    :members:
    :special-members: __call__
LabelToContour
.. autoclass:: LabelToContour
    :members:
    :special-members: __call__
MeanEnsemble
.. autoclass:: MeanEnsemble
    :members:
    :special-members: __call__
Prob NMS
.. autoclass:: ProbNMS
  :members:
VoteEnsemble
.. autoclass:: VoteEnsemble
    :members:
    :special-members: __call__

Spatial

Spacing
.. autoclass:: Spacing
    :members:
    :special-members: __call__
Orientation
.. autoclass:: Orientation
    :members:
    :special-members: __call__
RandRotate
.. autoclass:: RandRotate
    :members:
    :special-members: __call__
RandFlip
.. autoclass:: RandFlip
    :members:
    :special-members: __call__
RandAxisFlip
.. autoclass:: RandAxisFlip
    :members:
    :special-members: __call__
RandZoom
.. autoclass:: RandZoom
    :members:
    :special-members: __call__
Affine
.. autoclass:: Affine
    :members:
    :special-members: __call__
Resample
.. autoclass:: Resample
    :members:
    :special-members: __call__
RandAffine
.. autoclass:: RandAffine
    :members:
    :special-members: __call__
RandDeformGrid
.. autoclass:: RandDeformGrid
    :members:
    :special-members: __call__
AffineGrid
.. autoclass:: AffineGrid
    :members:
    :special-members: __call__
RandAffineGrid
.. autoclass:: RandAffineGrid
    :members:
    :special-members: __call__
Rand2DElastic
.. autoclass:: Rand2DElastic
    :members:
    :special-members: __call__
Rand3DElastic
.. autoclass:: Rand3DElastic
    :members:
    :special-members: __call__
Rotate90
.. autoclass:: Rotate90
    :members:
    :special-members: __call__
RandRotate90
.. autoclass:: RandRotate90
    :members:
    :special-members: __call__
Flip
.. autoclass:: Flip
    :members:
    :special-members: __call__
Resize
.. autoclass:: Resize
    :members:
    :special-members: __call__
Rotate
.. autoclass:: Rotate
    :members:
    :special-members: __call__
Zoom
.. autoclass:: Zoom
    :members:
    :special-members: __call__
AddCoordinateChannels
.. autoclass:: AddCoordinateChannels
    :members:
    :special-members: __call__

Utility

Identity
.. autoclass:: Identity
    :members:
    :special-members: __call__
AsChannelFirst
.. autoclass:: AsChannelFirst
    :members:
    :special-members: __call__
AsChannelLast
.. autoclass:: AsChannelLast
    :members:
    :special-members: __call__
AddChannel
.. autoclass:: AddChannel
    :members:
    :special-members: __call__
EnsureChannelFirst
.. autoclass:: EnsureChannelFirst
    :members:
    :special-members: __call__
RepeatChannel
.. autoclass:: RepeatChannel
    :members:
    :special-members: __call__
SplitChannel
.. autoclass:: SplitChannel
    :members:
    :special-members: __call__
CastToType
.. autoclass:: CastToType
    :members:
    :special-members: __call__
ToTensor
.. autoclass:: ToTensor
    :members:
    :special-members: __call__
ToNumpy
.. autoclass:: ToNumpy
    :members:
    :special-members: __call__
ToCupy
.. autoclass:: ToCupy
    :members:
    :special-members: __call__
Transpose
.. autoclass:: Transpose
    :members:
    :special-members: __call__
SqueezeDim
.. autoclass:: SqueezeDim
    :members:
    :special-members: __call__
DataStats
.. autoclass:: DataStats
    :members:
    :special-members: __call__
SimulateDelay
.. autoclass:: SimulateDelay
    :members:
    :special-members: __call__
Lambda
.. autoclass:: Lambda
    :members:
    :special-members: __call__
LabelToMask
.. autoclass:: LabelToMask
    :members:
    :special-members: __call__
FgBgToIndices
.. autoclass:: FgBgToIndices
    :members:
    :special-members: __call__
ConvertToMultiChannelBasedOnBratsClasses
.. autoclass:: ConvertToMultiChannelBasedOnBratsClasses
    :members:
    :special-members: __call__
AddExtremePointsChannel
.. autoclass:: AddExtremePointsChannel
    :members:
    :special-members: __call__
TorchVision
.. autoclass:: TorchVision
    :members:
    :special-members: __call__
MapLabelValue
.. autoclass:: MapLabelValue
    :members:
    :special-members: __call__

Dictionary Transforms

Crop and Pad (Dict)

SpatialPadd
.. autoclass:: SpatialPadd
    :members:
    :special-members: __call__
BorderPadd
.. autoclass:: BorderPadd
    :members:
    :special-members: __call__
DivisiblePadd
.. autoclass:: DivisiblePadd
    :members:
    :special-members: __call__
SpatialCropd
.. autoclass:: SpatialCropd
    :members:
    :special-members: __call__
CenterSpatialCropd
.. autoclass:: CenterSpatialCropd
    :members:
    :special-members: __call__
RandSpatialCropd
.. autoclass:: RandSpatialCropd
    :members:
    :special-members: __call__
RandSpatialCropSamplesd
.. autoclass:: RandSpatialCropSamplesd
    :members:
    :special-members: __call__
CropForegroundd
.. autoclass:: CropForegroundd
    :members:
    :special-members: __call__
RandWeightedCropd
.. autoclass:: RandWeightedCropd
    :members:
    :special-members: __call__
RandCropByPosNegLabeld
.. autoclass:: RandCropByPosNegLabeld
    :members:
    :special-members: __call__
ResizeWithPadOrCropd
.. autoclass:: ResizeWithPadOrCropd
    :members:
    :special-members: __call__
BoundingRectd
.. autoclass:: BoundingRectd
    :members:
    :special-members: __call__
RandScaleCropd
.. autoclass:: RandScaleCropd
    :members:
    :special-members: __call__
CenterScaleCropd
.. autoclass:: CenterScaleCropd
    :members:
    :special-members: __call__

Instensity (Dict)

RandGaussianNoised
.. autoclass:: RandGaussianNoised
    :members:
    :special-members: __call__
ShiftIntensityd
.. autoclass:: ShiftIntensityd
    :members:
    :special-members: __call__
RandShiftIntensityd
.. autoclass:: RandShiftIntensityd
    :members:
    :special-members: __call__
StdShiftIntensityd
.. autoclass:: StdShiftIntensityd
    :members:
    :special-members: __call__
RandStdShiftIntensityd
.. autoclass:: RandStdShiftIntensityd
    :members:
    :special-members: __call__
RandBiasFieldd
.. autoclass:: RandBiasFieldd
    :members:
    :special-members: __call__
ScaleIntensityd
.. autoclass:: ScaleIntensityd
    :members:
    :special-members: __call__
RandScaleIntensityd
.. autoclass:: RandScaleIntensityd
    :members:
    :special-members: __call__
NormalizeIntensityd
.. autoclass:: NormalizeIntensityd
    :members:
    :special-members: __call__
ThresholdIntensityd
.. autoclass:: ThresholdIntensityd
    :members:
    :special-members: __call__
ScaleIntensityRanged
.. autoclass:: ScaleIntensityRanged
    :members:
    :special-members: __call__
GibbsNoised
.. autoclass:: GibbsNoised
    :members:
    :special-members: __call__
RandGibbsNoised
.. autoclass:: RandGibbsNoised
    :members:
    :special-members: __call__
KSpaceSpikeNoised
.. autoclass:: KSpaceSpikeNoised
    :members:
    :special-members: __call__
RandKSpaceSpikeNoised
.. autoclass:: RandKSpaceSpikeNoised
    :members:
    :special-members: __call__
ScaleIntensityRangePercentilesd
.. autoclass:: ScaleIntensityRangePercentilesd
    :members:
    :special-members: __call__
AdjustContrastd
.. autoclass:: AdjustContrastd
    :members:
    :special-members: __call__
RandAdjustContrastd
.. autoclass:: RandAdjustContrastd
    :members:
    :special-members: __call__
MaskIntensityd
.. autoclass:: MaskIntensityd
    :members:
    :special-members: __call__
GaussianSmoothd
.. autoclass:: GaussianSmoothd
    :members:
    :special-members: __call__
RandGaussianSmoothd
.. autoclass:: RandGaussianSmoothd
    :members:
    :special-members: __call__
GaussianSharpend
.. autoclass:: GaussianSharpend
    :members:
    :special-members: __call__
RandGaussianSharpend
.. autoclass:: RandGaussianSharpend
    :members:
    :special-members: __call__
RandHistogramShiftd
.. autoclass:: RandHistogramShiftd
    :members:
    :special-members: __call__

IO (Dict)

LoadImaged
.. autoclass:: LoadImaged
    :members:
    :special-members: __call__
SaveImaged
.. autoclass:: SaveImaged
    :members:
    :special-members: __call__

Post-processing (Dict)

Activationsd
.. autoclass:: Activationsd
    :members:
    :special-members: __call__
AsDiscreted
.. autoclass:: AsDiscreted
    :members:
    :special-members: __call__
KeepLargestConnectedComponentd
.. autoclass:: KeepLargestConnectedComponentd
    :members:
    :special-members: __call__
LabelToContourd
.. autoclass:: LabelToContourd
    :members:
    :special-members: __call__
Ensembled
.. autoclass:: Ensembled
    :members:
    :special-members: __call__
MeanEnsembled
.. autoclass:: MeanEnsembled
    :members:
    :special-members: __call__
VoteEnsembled
.. autoclass:: VoteEnsembled
    :members:
    :special-members: __call__
Invertd
.. autoclass:: Invertd
    :members:
    :special-members: __call__
SaveClassificationd
.. autoclass:: SaveClassificationd
    :members:
    :special-members: __call__

Spatial (Dict)

Spacingd
.. autoclass:: Spacingd
    :members:
    :special-members: __call__
Orientationd
.. autoclass:: Orientationd
    :members:
    :special-members: __call__
Flipd
.. autoclass:: Flipd
    :members:
    :special-members: __call__
RandFlipd
.. autoclass:: RandFlipd
    :members:
    :special-members: __call__
RandAxisFlipd
.. autoclass:: RandAxisFlipd
    :members:
    :special-members: __call__
Rotated
.. autoclass:: Rotated
    :members:
    :special-members: __call__
RandRotated
.. autoclass:: RandRotated
    :members:
    :special-members: __call__
Zoomd
.. autoclass:: Zoomd
    :members:
    :special-members: __call__
RandZoomd
.. autoclass:: RandZoomd
    :members:
    :special-members: __call__
RandRotate90d
.. autoclass:: RandRotate90d
    :members:
    :special-members: __call__
Rotate90d
.. autoclass:: Rotate90d
    :members:
    :special-members: __call__
Resized
.. autoclass:: Resized
    :members:
    :special-members: __call__
Affined
.. autoclass:: Affined
    :members:
    :special-members: __call__
RandAffined
.. autoclass:: RandAffined
    :members:
    :special-members: __call__
Rand2DElasticd
.. autoclass:: Rand2DElasticd
    :members:
    :special-members: __call__
Rand3DElasticd
.. autoclass:: Rand3DElasticd
    :members:
    :special-members: __call__
AddCoordinateChannelsd
.. autoclass:: AddCoordinateChannelsd
    :members:
    :special-members: __call__

Utility (Dict)

Identityd
.. autoclass:: Identityd
    :members:
    :special-members: __call__
AsChannelFirstd
.. autoclass:: AsChannelFirstd
    :members:
    :special-members: __call__
AsChannelLastd
.. autoclass:: AsChannelLastd
    :members:
    :special-members: __call__
AddChanneld
.. autoclass:: AddChanneld
    :members:
    :special-members: __call__
EnsureChannelFirstd
.. autoclass:: EnsureChannelFirstd
    :members:
    :special-members: __call__
RepeatChanneld
.. autoclass:: RepeatChanneld
    :members:
    :special-members: __call__
SplitChanneld
.. autoclass:: SplitChanneld
    :members:
    :special-members: __call__
CastToTyped
.. autoclass:: CastToTyped
    :members:
    :special-members: __call__
ToTensord
.. autoclass:: ToTensord
    :members:
    :special-members: __call__
ToNumpyd
.. autoclass:: ToNumpyd
    :members:
    :special-members: __call__
ToCupyd
.. autoclass:: ToCupyd
    :members:
    :special-members: __call__
DeleteItemsd
.. autoclass:: DeleteItemsd
    :members:
    :special-members: __call__
SelectItemsd
.. autoclass:: SelectItemsd
    :members:
    :special-members: __call__
SqueezeDimd
.. autoclass:: SqueezeDimd
    :members:
    :special-members: __call__
DataStatsd
.. autoclass:: DataStatsd
    :members:
    :special-members: __call__
SimulateDelayd
.. autoclass:: SimulateDelayd
    :members:
    :special-members: __call__
CopyItemsd
.. autoclass:: CopyItemsd
    :members:
    :special-members: __call__
ConcatItemsd
.. autoclass:: ConcatItemsd
    :members:
    :special-members: __call__
Lambdad
.. autoclass:: Lambdad
    :members:
    :special-members: __call__
RandLambdad
.. autoclass:: RandLambdad
    :members:
    :special-members: __call__
LabelToMaskd
.. autoclass:: LabelToMaskd
    :members:
    :special-members: __call__
FgBgToIndicesd
.. autoclass:: FgBgToIndicesd
    :members:
    :special-members: __call__
ConvertToMultiChannelBasedOnBratsClassesd
.. autoclass:: ConvertToMultiChannelBasedOnBratsClassesd
    :members:
    :special-members: __call__
AddExtremePointsChanneld
.. autoclass:: AddExtremePointsChanneld
    :members:
    :special-members: __call__
TorchVisiond
.. autoclass:: TorchVisiond
    :members:
    :special-members: __call__
RandTorchVisiond
.. autoclass:: RandTorchVisiond
    :members:
    :special-members: __call__
MapLabelValued
.. autoclass:: MapLabelValued
    :members:
    :special-members: __call__

Transform Adaptors

.. automodule:: monai.transforms.adaptors

adaptor

.. autofunction:: monai.transforms.adaptors.adaptor

apply_alias

.. autofunction:: monai.transforms.adaptors.apply_alias

to_kwargs

.. autofunction:: monai.transforms.adaptors.to_kwargs

Utilities

.. automodule:: monai.transforms.utils
    :members: