This is a library for simulating realistic single-cell RNA sequencing data based on a given causal structure, scalable to the dimension of genome-wide gene perturbation screens.
Implementation of method developed in "Simulation-based Benchmarking of Causal Structure Learning in Gene Perturbation Experiments".
- Download the package from GitHub
git clone https://github.com/luka-kovacevic/causalregnet
- Navigate to the package
cd causalregnet/
-
Check your environment (ensure it's the same one you're using to run code)
-
Install the package
pip install .