From 2a3c4315822e900d40142e80b58fb7f9b25af51a Mon Sep 17 00:00:00 2001
From: Luca Venturini <lucventurini@gmail.com>
Date: Tue, 30 Jul 2019 15:15:06 +0100
Subject: [PATCH] Small BF for avoiding shutil.move to crash when /tmp and work
 directory are on different file systems.

---
 Mikado/scales/compare.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/Mikado/scales/compare.py b/Mikado/scales/compare.py
index 0caeb99d6..2b35fbed8 100644
--- a/Mikado/scales/compare.py
+++ b/Mikado/scales/compare.py
@@ -646,7 +646,8 @@ def create_index(reference, queue_logger, index_name, ref_gff=False,
     conn.commit()
     conn.close()
 
-    shutil.move(temp_db, index_name)
+    shutil.copy(temp_db, index_name)
+    os.remove(temp_db)
 
     return