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lmc297/bactaxR
What do the lengths of the edges in the weighted undirected graphs mean?

Does it represent the ANI of that pair? Or does edge weight represent the ANI? Thank you!
  • kehletdelgado
  • 4
  • Opened 
    on Nov 9, 2023
  • #6

lmc297/bactaxR
Error in hclust(d = d.dist, method = "average") : NA/NaN/Inf in foreign function call (arg 10)

I have the same problem of this R script. summary(ani) An object of class bactaxRObject Number of genomes: 33 Total number of pairwise ANI comparisons: 1086 h - ANI.histogram(bactaxRObject = ani, bindwidth ...
  • amydy
  • 2
  • Opened 
    on Sep 22, 2023
  • #5

lmc297/bactaxR
Error in hclust(d = d.dist, method = "average") : NA/NaN/Inf in foreign function call (arg 10)

I have successfully ran the package to generate a histogram, however when I am trying to generate the dendrogram I ran into the following error: summary(ani) An object of class bactaxRObject Number of ...
  • Tswunami
  • 3
  • Opened 
    on Sep 19, 2023
  • #4

lmc297/bactaxR
extracting dendrogram as newick file

dear @lmc297 First off, great package!!! I have been able to use this package and I am very happy with the results obtained. Nevertheless, I was wondering if there is a way to extract the resulting dendrogram ...
  • pavlo888
  • Opened 
    on Jun 22, 2022
  • #3

lmc297/bactaxR
ANI.dendrogram hclust error

Hello, Thank you so much for developing and sharing this tool! I am trying to make a tree from fastANI pairwise data. After successfully importing the txt file, I received the following error when I ran ...
  • jessih26
  • 2
  • Opened 
    on Feb 9, 2021
  • #2

lmc297/bactaxR
Install

Hi, I met some issue when I tried to install your package. I tried to use source, but I met another issues. Thanks for your help! R version 3.6.0 (2019-04-26) install_github( lmc297/bactaxR ) Downloading ...
  • ntromas
  • 5
  • Opened 
    on Apr 10, 2020
  • #1
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