diff --git a/sphae.sh b/sphae.sh index 1e01f97..d141d8f 100755 --- a/sphae.sh +++ b/sphae.sh @@ -12,8 +12,8 @@ #SBATCH --qos=hc-concurrent-jobs #sphae install -sphae run --input tests/data/illumina-subset --threads 64 -k -sphae run --input tests/data/nanopore-subset --sequencing longread --threads 64 -k -sphae run --input tests/data/nanopore-subset --sequencing longread --threads 64 -k --no_medaka +#sphae run --input tests/data/illumina-subset --threads 64 -k +#sphae run --input tests/data/nanopore-subset --sequencing longread --threads 64 -k +sphae run --input tests/data/nanopore-subset --sequencing longread --threads 64 -k --no_medaka --db_dir tests/db #sphae annotate --genome tests/data/genome --threads 64 diff --git a/tests/db/Pfam35.0/Pfam-A.hmm.gz b/tests/db/Pfam35.0/Pfam-A.hmm.gz new file mode 100644 index 0000000..1d6dbb8 --- /dev/null +++ b/tests/db/Pfam35.0/Pfam-A.hmm.gz @@ -0,0 +1 @@ +cdscds diff --git a/tests/db/checkv-db-v1.5/genome_db/checkv_reps.dmnd b/tests/db/checkv-db-v1.5/genome_db/checkv_reps.dmnd new file mode 100644 index 0000000..e69de29 diff --git a/tests/db/checkv-db-v1.5/genome_db/checkv_reps.tsv b/tests/db/checkv-db-v1.5/genome_db/checkv_reps.tsv new file mode 100644 index 0000000..e69de29 diff --git a/tests/db/pharokka_db b/tests/db/pharokka_db new file mode 100644 index 0000000..e69de29 diff --git a/tests/db/phold b/tests/db/phold new file mode 100644 index 0000000..e69de29 diff --git a/tests/db/phynteny_models_zenodo b/tests/db/phynteny_models_zenodo new file mode 100644 index 0000000..e69de29