Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[bioparser::FastaParser] error: invalid file format #25

Open
barakdror opened this issue Aug 19, 2020 · 1 comment
Open

[bioparser::FastaParser] error: invalid file format #25

barakdror opened this issue Aug 19, 2020 · 1 comment

Comments

@barakdror
Copy link

barakdror commented Aug 19, 2020

Hi,
My input file is a ONT fastq file (where I simply cat *.fastq > bacteria01.fastq the reads I got from the sequencing center).
However, it is not recognized by Raven.
Command:
raven -t 50 bacteria01.fastq

There are no 0-length reads in the file.fq.
I'll be happy for any help (converting the fastq to fastq didn't work as well).

@rvaser
Copy link
Collaborator

rvaser commented Aug 22, 2020

Hello,
the error you got was [bioparser::FastaParser] error: invalid file format? This usually means that your file extension does not match the file format. Although, the command you posted has .fastq. Can you check if that is correct?

Sorry for my late response!
Best regards,
Robert

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants