{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":139171577,"defaultBranch":"master","name":"knowledgesystems-k8s-deployment","ownerLogin":"knowledgesystems","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-06-29T16:21:20.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/18030682?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1722884755.0","currentOid":""},"activityList":{"items":[{"before":"5f2b2f2106c0a284f4daab5d315113dcbaecbf78","after":"d4b3669fc2af10908640c2b9c6b7e204dd5ece7e","ref":"refs/heads/master","pushedAt":"2024-09-25T19:37:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"calvinlu3","name":"Calvin Lu","path":"/calvinlu3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/59149377?s=80&v=4"},"commit":{"message":"Fix JDBC url","shortMessageHtmlLink":"Fix JDBC url"}},{"before":"2bd6ae0f2f67af9a3c145250fbda7c16c3fb6916","after":"5f2b2f2106c0a284f4daab5d315113dcbaecbf78","ref":"refs/heads/master","pushedAt":"2024-09-25T18:58:02.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"zhx828","name":"Hongxin","path":"/zhx828","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5400599?s=80&v=4"},"commit":{"message":"Merge pull request #221 from jfkonecn/v4.21\n\nv4.21","shortMessageHtmlLink":"Merge pull request #221 from jfkonecn/v4.21"}},{"before":"f9ed431dde1ecf18bfa84936e03b1a805bbdc2fe","after":"2bd6ae0f2f67af9a3c145250fbda7c16c3fb6916","ref":"refs/heads/master","pushedAt":"2024-09-24T21:40:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dippindots","name":"Gaofei Zhao","path":"/dippindots","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15748980?s=80&v=4"},"commit":{"message":"deploy cbioportal v6.0.16","shortMessageHtmlLink":"deploy cbioportal v6.0.16"}},{"before":"03777cf6c135f39232a6ba00ac6dde9247b01691","after":"f9ed431dde1ecf18bfa84936e03b1a805bbdc2fe","ref":"refs/heads/master","pushedAt":"2024-09-24T13:39:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamesqo","name":"James Ko","path":"/jamesqo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9159214?s=80&v=4"},"commit":{"message":"Add wt_target_gdc to the list of priority studies for CRDC portal","shortMessageHtmlLink":"Add wt_target_gdc to the list of priority studies for CRDC portal"}},{"before":"d0bdb3406c9a6ca4fd20a5af3410c233e8763feb","after":"03777cf6c135f39232a6ba00ac6dde9247b01691","ref":"refs/heads/master","pushedAt":"2024-09-23T16:35:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"calvinlu3","name":"Calvin Lu","path":"/calvinlu3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/59149377?s=80&v=4"},"commit":{"message":"Update oncokb curation to v2.0.23","shortMessageHtmlLink":"Update oncokb curation to v2.0.23"}},{"before":"03bd3fddf239813a620fa5a3a61f84b85c285859","after":"d0bdb3406c9a6ca4fd20a5af3410c233e8763feb","ref":"refs/heads/master","pushedAt":"2024-09-19T21:36:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zhx828","name":"Hongxin","path":"/zhx828","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5400599?s=80&v=4"},"commit":{"message":"Update oncokb_core_data_legacy.yaml","shortMessageHtmlLink":"Update oncokb_core_data_legacy.yaml"}},{"before":"d207b95944ff6982169cce198f43768ef5e40508","after":"03bd3fddf239813a620fa5a3a61f84b85c285859","ref":"refs/heads/master","pushedAt":"2024-09-19T21:20:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zhx828","name":"Hongxin","path":"/zhx828","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5400599?s=80&v=4"},"commit":{"message":"Add data-legacy.oncokb.aws.mskcc.org","shortMessageHtmlLink":"Add data-legacy.oncokb.aws.mskcc.org"}},{"before":"6d8b70a4026b14924506bb31a3df87fec92efe47","after":"d207b95944ff6982169cce198f43768ef5e40508","ref":"refs/heads/master","pushedAt":"2024-09-16T14:49:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"inodb","name":"Ino de Bruijn","path":"/inodb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1334004?s=80&v=4"},"commit":{"message":"fix nonredundant studies list","shortMessageHtmlLink":"fix nonredundant studies list"}},{"before":"11fc4c31a303b1a3931d965be0b466838f4becb4","after":"6d8b70a4026b14924506bb31a3df87fec92efe47","ref":"refs/heads/master","pushedAt":"2024-09-07T00:15:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zhx828","name":"Hongxin","path":"/zhx828","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5400599?s=80&v=4"},"commit":{"message":"Update oncokb-core-legacy config to work with the latest cluster config","shortMessageHtmlLink":"Update oncokb-core-legacy config to work with the latest cluster config"}},{"before":"fe7a9fc7e0c8fd19ece145aea6bc502e91eb52d9","after":"11fc4c31a303b1a3931d965be0b466838f4becb4","ref":"refs/heads/master","pushedAt":"2024-09-07T00:04:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zhx828","name":"Hongxin","path":"/zhx828","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5400599?s=80&v=4"},"commit":{"message":"Add app name for core services that are missing","shortMessageHtmlLink":"Add app name for core services that are missing"}},{"before":"1821aecf182252623eb601134b61ed42c0889a9c","after":"fe7a9fc7e0c8fd19ece145aea6bc502e91eb52d9","ref":"refs/heads/master","pushedAt":"2024-08-28T19:52:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zhx828","name":"Hongxin","path":"/zhx828","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5400599?s=80&v=4"},"commit":{"message":"Update oncokb_public.yaml","shortMessageHtmlLink":"Update oncokb_public.yaml"}},{"before":"7134ffb354540bab3225ba6fa26c1480e4f15b1a","after":"1821aecf182252623eb601134b61ed42c0889a9c","ref":"refs/heads/master","pushedAt":"2024-08-27T17:55:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamesqo","name":"James Ko","path":"/jamesqo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9159214?s=80&v=4"},"commit":{"message":"update rfc80-msk cbioportal deployment","shortMessageHtmlLink":"update rfc80-msk cbioportal deployment"}},{"before":"e129ca5b4e696d5557cd7067dfd1fafe8076d482","after":"7134ffb354540bab3225ba6fa26c1480e4f15b1a","ref":"refs/heads/master","pushedAt":"2024-08-23T13:10:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"calvinlu3","name":"Calvin Lu","path":"/calvinlu3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/59149377?s=80&v=4"},"commit":{"message":"Update oncokb curation to v2.0.22","shortMessageHtmlLink":"Update oncokb curation to v2.0.22"}},{"before":"1f4facabceae04939c65afaa88e86ab36241ff26","after":"e129ca5b4e696d5557cd7067dfd1fafe8076d482","ref":"refs/heads/master","pushedAt":"2024-08-23T08:35:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"alisman","name":null,"path":"/alisman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/186521?s=80&v=4"},"commit":{"message":"set production genie cache databases","shortMessageHtmlLink":"set production genie cache databases"}},{"before":"dfd5a5d4e6613e8379e37b6f2ee0719ce14e1831","after":"1f4facabceae04939c65afaa88e86ab36241ff26","ref":"refs/heads/master","pushedAt":"2024-08-22T15:07:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zhx828","name":"Hongxin","path":"/zhx828","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5400599?s=80&v=4"},"commit":{"message":"Update oncokb-curation to 2.0.21","shortMessageHtmlLink":"Update oncokb-curation to 2.0.21"}},{"before":"db37d9bfff2126634e8eab5e6d43dfb7a01dc41f","after":"dfd5a5d4e6613e8379e37b6f2ee0719ce14e1831","ref":"refs/heads/master","pushedAt":"2024-08-21T19:18:03.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"averyniceday","name":null,"path":"/averyniceday","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/18199796?s=80&v=4"},"commit":{"message":"Airflow prod (#216)\n\n* Initial commit of Airflow deployment files\r\n\r\n* Remove python2 dependency\r\n\r\n* java 21\r\n\r\n* Reorganization\r\n\r\n* Separate Airflow server Docker image\r\n\r\n* Update datadog-agent\r\n\r\n* Update airflow-ingress/airflow-nci-ingress\r\n\r\n* Move files to project repo\r\n\r\n* Add functions to utility script\r\n\r\n* Upgrade Airflow helm chart to 1.14.0\r\n\r\n* Update override-values\r\n\r\n* CDM setup script\r\n\r\n* Update deps\r\n\r\n* Update datadog-agent.yaml\r\n\r\n* Remove commented lines\r\n\r\n* Fix git clone issue, add cdm repos and vars, set up hpc3 ssh conn\r\n\r\n* Add email configuration\r\n\r\n* Airflow merge (#2)\r\n\r\n* Separate Airflow server Docker image\r\n\r\n* Update airflow-ingress/airflow-nci-ingress\r\n\r\n* Move files to project repo\r\n\r\n* Add functions to utility script\r\n\r\n* Upgrade Airflow helm chart to 1.14.0\r\n\r\n* Update override-values\r\n\r\n* CDM setup script\r\n\r\n* Update deps\r\n\r\n* change repos\r\n\r\n* Remove comments from override values\r\n\r\n* create secret for hpc3 keyfile\r\n\r\n* small changes to override-values\r\n\r\n* Changes to airflow-merge branch (#3)\r\n\r\n* Separate Airflow server Docker image\r\n\r\n* Update datadog-agent\r\n\r\n* Update airflow-ingress/airflow-nci-ingress\r\n\r\n* Move files to project repo\r\n\r\n* Add functions to utility script\r\n\r\n* Upgrade Airflow helm chart to 1.14.0\r\n\r\n* Update override-values\r\n\r\n* CDM setup script\r\n\r\n* Update deps\r\n\r\n* Move ingress files\r\n\r\n* Cleanup comments in override-values\r\n\r\n* Remove NCI ingress from airflow/ folder\r\n\r\n* Finish PR changes\r\n\r\n* Fix ingress file\r\n\r\n* Make it possible to override nodegroup\r\n\r\n* Fix quoting\r\n\r\n* Add note about volume leakage\r\n\r\n---------\r\n\r\nCo-authored-by: cbioportal import user \r\n\r\n---------\r\n\r\nCo-authored-by: James Ko \r\nCo-authored-by: James Ko \r\nCo-authored-by: cbioportal import user \r\n\r\n* Enable Airflow API\r\n\r\n* Add template for deploying multiple schedulers and specify dag storage class\r\n\r\n* Reorganize files\r\n\r\n* Docs first pass\r\n\r\n* Dev ingress files, move airflow-utils\r\n\r\n* Readme second pass\r\n\r\n* Remove airflow-utils\r\n\r\n* Remove comment from Dockerfile\r\n\r\n* Remove values.yaml, update README\r\n\r\n* Remove comments, remove secrets\r\n\r\n* Remove extra values from gitignore\r\n\r\n* Update secrets path\r\n\r\n* Store webserver secret key in k8s secret\r\n\r\n* Remove kubernetes install from dockerfile\r\n\r\n* Remove appSecret from datadog-agent.yaml\r\n\r\n* Use base airflow docker image\r\n\r\n* Remove Dockerfile\r\n\r\n* Turn off dag persistence, remove pod template file mount\r\n\r\n* Fix datadog link, add comment\r\n\r\n* Update comments\r\n\r\n---------\r\n\r\nCo-authored-by: James Ko \r\nCo-authored-by: James Ko \r\nCo-authored-by: cbioportal import user ","shortMessageHtmlLink":"Airflow prod (#216)"}},{"before":"1885af17489ffa20d9e6464363836e000506d8bf","after":"db37d9bfff2126634e8eab5e6d43dfb7a01dc41f","ref":"refs/heads/master","pushedAt":"2024-08-21T14:48:03.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"hweej","name":"Jason Hwee","path":"/hweej","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1216418?s=80&v=4"},"commit":{"message":"Merge pull request #218 from hweej/master\n\nAdd back Q3_norm_all_batch_reduced_meta_1 resource for GrayFoundation…","shortMessageHtmlLink":"Merge pull request #218 from hweej/master"}},{"before":"125d86ce62a94eb0ef47d8f4bb17e5697053e783","after":"1885af17489ffa20d9e6464363836e000506d8bf","ref":"refs/heads/master","pushedAt":"2024-08-20T14:39:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"calvinlu3","name":"Calvin Lu","path":"/calvinlu3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/59149377?s=80&v=4"},"commit":{"message":"Update oncokb curation to v2.0.20","shortMessageHtmlLink":"Update oncokb curation to v2.0.20"}},{"before":"a75a881b3c45f90877a2cb0471d0b11b8982fca4","after":"125d86ce62a94eb0ef47d8f4bb17e5697053e783","ref":"refs/heads/master","pushedAt":"2024-08-16T20:01:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zhx828","name":"Hongxin","path":"/zhx828","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5400599?s=80&v=4"},"commit":{"message":"Update oncokb public instances to 3.14.7","shortMessageHtmlLink":"Update oncokb public instances to 3.14.7"}},{"before":"e490e7c55545a32ca31475364af846e8ee3f635a","after":"a75a881b3c45f90877a2cb0471d0b11b8982fca4","ref":"refs/heads/master","pushedAt":"2024-08-16T15:23:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zhx828","name":"Hongxin","path":"/zhx828","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5400599?s=80&v=4"},"commit":{"message":"Update public oncokb core instance to 3.20.3","shortMessageHtmlLink":"Update public oncokb core instance to 3.20.3"}},{"before":"7322d8cfa630e644d2928c6aca251a5f4329aacd","after":"e490e7c55545a32ca31475364af846e8ee3f635a","ref":"refs/heads/master","pushedAt":"2024-08-15T15:53:25.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"jfkonecn","name":"John Konecny","path":"/jfkonecn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/24961694?s=80&v=4"},"commit":{"message":"v4.20 (#217)","shortMessageHtmlLink":"v4.20 (#217)"}},{"before":"85e29dbe995c11aa9b10264d55bc368cb36fa216","after":"7322d8cfa630e644d2928c6aca251a5f4329aacd","ref":"refs/heads/master","pushedAt":"2024-08-13T13:31:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"calvinlu3","name":"Calvin Lu","path":"/calvinlu3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/59149377?s=80&v=4"},"commit":{"message":"Update oncokb curation to v2.0.16","shortMessageHtmlLink":"Update oncokb curation to v2.0.16"}},{"before":"abc97e612194e00aa61f9fb587aec24092b19f9d","after":"85e29dbe995c11aa9b10264d55bc368cb36fa216","ref":"refs/heads/master","pushedAt":"2024-08-09T18:08:57.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"jamesqo","name":"James Ko","path":"/jamesqo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9159214?s=80&v=4"},"commit":{"message":"Merge pull request #214 from knowledgesystems/enable-cross-study-expression\n\nEnable cross-study expression comparison for TCGA GDC studies in public portal","shortMessageHtmlLink":"Merge pull request #214 from knowledgesystems/enable-cross-study-expr…"}},{"before":"b8d26d217f6c6032b9287cebc19b4414e448334d","after":"abc97e612194e00aa61f9fb587aec24092b19f9d","ref":"refs/heads/master","pushedAt":"2024-08-09T18:08:47.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"jamesqo","name":"James Ko","path":"/jamesqo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9159214?s=80&v=4"},"commit":{"message":"Merge pull request #213 from knowledgesystems/switch-back-to-publicdb\n\nSwitch public deployment back to `publicdb.cbioportal.org`","shortMessageHtmlLink":"Merge pull request #213 from knowledgesystems/switch-back-to-publicdb"}},{"before":"ba21ced69b95ea2d83f35b64d5178f58e0c8cb24","after":"b8d26d217f6c6032b9287cebc19b4414e448334d","ref":"refs/heads/master","pushedAt":"2024-08-09T15:02:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"calvinlu3","name":"Calvin Lu","path":"/calvinlu3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/59149377?s=80&v=4"},"commit":{"message":"Update oncokb curation to v2.0.15","shortMessageHtmlLink":"Update oncokb curation to v2.0.15"}},{"before":"5c4a31dc783cd6774e9b6ccf363a83ecd1bd1cb9","after":"ba21ced69b95ea2d83f35b64d5178f58e0c8cb24","ref":"refs/heads/master","pushedAt":"2024-08-08T19:48:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dippindots","name":"Gaofei Zhao","path":"/dippindots","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15748980?s=80&v=4"},"commit":{"message":"deploy v6.0.14 to portals in private cluster","shortMessageHtmlLink":"deploy v6.0.14 to portals in private cluster"}},{"before":"7a8ce6538a0ede6b76eedb18e33c2891453a2a1e","after":"5c4a31dc783cd6774e9b6ccf363a83ecd1bd1cb9","ref":"refs/heads/master","pushedAt":"2024-08-08T19:38:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dippindots","name":"Gaofei Zhao","path":"/dippindots","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15748980?s=80&v=4"},"commit":{"message":"deploy v6.0.14 to public/genie portals and disable cache for master portal","shortMessageHtmlLink":"deploy v6.0.14 to public/genie portals and disable cache for master p…"}},{"before":"1432902abc607f932057d48f6f3c62ff2d447902","after":"7a8ce6538a0ede6b76eedb18e33c2891453a2a1e","ref":"refs/heads/master","pushedAt":"2024-08-08T14:49:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"calvinlu3","name":"Calvin Lu","path":"/calvinlu3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/59149377?s=80&v=4"},"commit":{"message":"Update oncokb curation to v2.0.14","shortMessageHtmlLink":"Update oncokb curation to v2.0.14"}},{"before":"5de4933e735c8abc7bc12209d8a9aa62cf819299","after":"1432902abc607f932057d48f6f3c62ff2d447902","ref":"refs/heads/master","pushedAt":"2024-08-08T00:59:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"zhx828","name":"Hongxin","path":"/zhx828","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5400599?s=80&v=4"},"commit":{"message":"Update oncokb core to 3.20.0","shortMessageHtmlLink":"Update oncokb core to 3.20.0"}},{"before":"4c679246ab1360a46936c5133c6147133a02e53e","after":"5de4933e735c8abc7bc12209d8a9aa62cf819299","ref":"refs/heads/master","pushedAt":"2024-08-05T19:06:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"averyniceday","name":null,"path":"/averyniceday","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/18199796?s=80&v=4"},"commit":{"message":"Update oncotree-eks-deployment-service.yaml\n\nUpdate image","shortMessageHtmlLink":"Update oncotree-eks-deployment-service.yaml"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0yNVQxOTozNzo0Mi4wMDAwMDBazwAAAATAungm","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOC0wNVQxOTowNjozOS4wMDAwMDBazwAAAASSXPMo"}},"title":"Activity · knowledgesystems/knowledgesystems-k8s-deployment"}