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run.sl
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run.sl
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#!/bin/bash
#SBATCH -p debug
#SBATCH -N 1
#SBATCH -C haswell
#SBATCH -t 00:20:00
#SBATCH -o btio_1_%j.txt
#SBATCH -e btio_1_%j.err
#SBATCH -L SCRATCH
#SBATCH -A m844
#SBATCH --gres=craynetwork:2
#DW jobdw capacity=640GiB access_mode=striped type=scratch
#DW jobdw capacity=640GiB access_mode=private type=scratch
RUNS=(1) # Number of runs
OUTDIR=/global/cscratch1/sd/khl7265/FS_64_8M/btio
NN=${SLURM_NNODES}
let NP=NN*4
#let NP=NN*32
#EDGEL=sqrt(NP)*16
EDGEL=32
DIMX=${EDGEL}
DIMY=${EDGEL}
DIMZ=512
NITR=8 # 5 * 8 MiB /process
TL=3
# Make sure BB stripe count is correct
srun -n 1 /global/homes/k/khl7265/sc ${DW_JOB_STRIPED}/test.bin 64
ret="$(sacct -o exitcode -n -j ${SLURM_JOB_ID}.0)"
# remove leading whitespace characters
ret="${ret#"${ret%%[![:space:]]*}"}"
# remove trailing whitespace characters
ret="${ret%"${ret##*[![:space:]]}"}"
if [[ "x${ret}" != "x0:0" ]]; then
echo "BB stripe count mismatch, quit"
exit 0
fi
echo "mkdir -p ${OUTDIR}"
mkdir -p ${OUTDIR}
if [[ "x${DW_JOB_STRIPED}" == "x" ]]; then
echo "BB path not set"
exit 0
fi
echo "rm -rf ${DW_JOB_STRIPED}/*"
rm -rf ${DW_JOB_STRIPED}/*
TSTARTTIME=`date +%s.%N`
for i in ${RUNS[@]}
do
# Ncmpio
echo "========================== NCMPI =========================="
>&2 echo "========================== NCMPI =========================="
echo "#%$: io_driver: ncmpi"
echo "#%$: number_of_nodes: ${NN}"
echo "#%$: number_of_proc: ${NP}"
echo "#%$: io_mode: blocking_coll"
echo "rm -f ${OUTDIR}/*"
rm -f ${OUTDIR}/*
let IO_METHOD=2
echo "m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=${OUTDIR} inputbt.m4 > inputbt.data"
m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=${OUTDIR} inputbt.m4 > inputbt.data
STARTTIME=`date +%s.%N`
srun -n ${NP} -t ${TL} ./btio
ENDTIME=`date +%s.%N`
TIMEDIFF=`echo "$ENDTIME - $STARTTIME" | bc | awk -F"." '{print $1"."$2}'`
echo "#%$: exe_time: $TIMEDIFF"
echo "ls -lah ${OUTDIR}"
ls -lah ${OUTDIR}
echo "lfs getstripe ${OUTDIR}"
lfs getstripe ${OUTDIR}
echo '-----+-----++------------+++++++++--+---'
# Ncmpio NB
echo "========================== NCMPI NB =========================="
>&2 echo "========================== NCMPI NB =========================="
echo "#%$: io_driver: ncmpi"
echo "#%$: number_of_nodes: ${NN}"
echo "#%$: number_of_proc: ${NP}"
echo "#%$: io_mode: nonblocking_coll"
echo "rm -f ${OUTDIR}/*"
rm -f ${OUTDIR}/*
let IO_METHOD=3
echo "m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=${OUTDIR} inputbt.m4 > inputbt.data"
m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=${OUTDIR} inputbt.m4 > inputbt.data
STARTTIME=`date +%s.%N`
srun -n ${NP} -t ${TL} ./btio
ENDTIME=`date +%s.%N`
TIMEDIFF=`echo "$ENDTIME - $STARTTIME" | bc | awk -F"." '{print $1"."$2}'`
echo "#%$: exe_time: $TIMEDIFF"
echo "ls -lah ${OUTDIR}"
ls -lah ${OUTDIR}
echo "lfs getstripe ${OUTDIR}"
lfs getstripe ${OUTDIR}
echo '-----+-----++------------+++++++++--+---'
# BB LPP P
echo "========================== BB LPP P =========================="
>&2 echo "========================== BB LPP P =========================="
echo "#%$: io_driver: bb_lpp_private"
echo "#%$: number_of_nodes: ${NN}"
echo "#%$: number_of_proc: ${NP}"
echo "#%$: io_mode: blocking_coll"
echo "rm -f ${OUTDIR}/*"
rm -f ${OUTDIR}/*
export PNETCDF_HINTS="nc_burst_buf=enable;nc_burst_buf_del_on_close=disable;nc_burst_buf_overwrite=enable;nc_burst_buf_dirname=${DW_JOB_PRIVATE}"
let IO_METHOD=12
echo "m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=${OUTDIR} inputbt.m4 > inputbt.data"
m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=${OUTDIR} inputbt.m4 > inputbt.data
STARTTIME=`date +%s.%N`
srun -n ${NP} -t ${TL} ./btio
ENDTIME=`date +%s.%N`
TIMEDIFF=`echo "$ENDTIME - $STARTTIME" | bc | awk -F"." '{print $1"."$2}'`
unset PNETCDF_HINTS
echo "#%$: exe_time: $TIMEDIFF"
echo "ls -lah ${OUTDIR}"
ls -lah ${OUTDIR}
echo "ls -lah ${DW_JOB_PRIVATE}"
ls -lah ${DW_JOB_PRIVATE}
echo "lfs getstripe ${OUTDIR}"
lfs getstripe ${OUTDIR}
echo '-----+-----++------------+++++++++--+---'
# BB LPP S
echo "========================== BB LPP S =========================="
>&2 echo "========================== BB LPP S =========================="
echo "#%$: io_driver: bb_lpp_striped"
echo "#%$: number_of_nodes: ${NN}"
echo "#%$: number_of_proc: ${NP}"
echo "#%$: io_mode: blocking_coll"
echo "rm -f ${OUTDIR}/*"
rm -f ${OUTDIR}/*
echo "rm -f ${DW_JOB_STRIPED}/*"
rm -f ${DW_JOB_STRIPED}/*
export PNETCDF_HINTS="nc_burst_buf=enable;nc_burst_buf_del_on_close=disable;nc_burst_buf_overwrite=enable;nc_burst_buf_dirname=${DW_JOB_STRIPED}"
let IO_METHOD=12
echo "m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=${OUTDIR} inputbt.m4 > inputbt.data"
m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=${OUTDIR} inputbt.m4 > inputbt.data
STARTTIME=`date +%s.%N`
srun -n ${NP} -t ${TL} ./btio
ENDTIME=`date +%s.%N`
TIMEDIFF=`echo "$ENDTIME - $STARTTIME" | bc | awk -F"." '{print $1"."$2}'`
unset PNETCDF_HINTS
echo "#%$: exe_time: $TIMEDIFF"
echo "ls -lah ${OUTDIR}"
ls -lah ${OUTDIR}
if [[ "${NP}" -lt 33 ]]; then
echo "ls -lah ${DW_JOB_STRIPED}"
ls -lah ${DW_JOB_STRIPED}
fi
echo "lfs getstripe ${OUTDIR}"
lfs getstripe ${OUTDIR}
echo '-----+-----++------------+++++++++--+---'
# BB LPN S
echo "========================== BB LPN S =========================="
>&2 echo "========================== BB LPN S =========================="
echo "#%$: io_driver: bb_lpn_striped"
echo "#%$: number_of_nodes: ${NN}"
echo "#%$: number_of_proc: ${NP}"
echo "#%$: io_mode: blocking_coll"
echo "rm -f ${OUTDIR}/*"
rm -f ${OUTDIR}/*
echo "rm -f ${DW_JOB_STRIPED}/*"
rm -f ${DW_JOB_STRIPED}/*
export PNETCDF_HINTS="nc_burst_buf=enable;nc_burst_buf_del_on_close=disable;nc_burst_buf_overwrite=enable;nc_burst_buf_shared_logs=enable;nc_burst_buf_dirname=${DW_JOB_STRIPED}"
let IO_METHOD=12
echo "m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=${OUTDIR} inputbt.m4 > inputbt.data"
m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=${OUTDIR} inputbt.m4 > inputbt.data
STARTTIME=`date +%s.%N`
srun -n ${NP} -t ${TL} ./btio
ENDTIME=`date +%s.%N`
TIMEDIFF=`echo "$ENDTIME - $STARTTIME" | bc | awk -F"." '{print $1"."$2}'`
unset PNETCDF_HINTS
echo "#%$: exe_time: $TIMEDIFF"
echo "ls -lah ${OUTDIR}"
ls -lah ${OUTDIR}
if [[ "${NP}" -lt 33 ]]; then
echo "ls -lah ${DW_JOB_STRIPED}"
ls -lah ${DW_JOB_STRIPED}
fi
echo "lfs getstripe ${OUTDIR}"
lfs getstripe ${OUTDIR}
echo '-----+-----++------------+++++++++--+---'
# BB LPP P
echo "========================== BB LPP P Itr =========================="
>&2 echo "========================== BB LPP P Itr =========================="
echo "#%$: io_driver: bb_lpp_private_itr"
echo "#%$: number_of_nodes: ${NN}"
echo "#%$: number_of_proc: ${NP}"
echo "#%$: io_mode: blocking_coll"
echo "rm -f ${OUTDIR}/*"
rm -f ${OUTDIR}/*
export PNETCDF_HINTS="nc_burst_buf=enable;nc_burst_buf_del_on_close=disable;nc_burst_buf_overwrite=enable;nc_burst_buf_dirname=${DW_JOB_PRIVATE}"
let IO_METHOD=2
echo "m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=${OUTDIR} inputbt.m4 > inputbt.data"
m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=${OUTDIR} inputbt.m4 > inputbt.data
STARTTIME=`date +%s.%N`
srun -n ${NP} -t ${TL} ./btio
ENDTIME=`date +%s.%N`
TIMEDIFF=`echo "$ENDTIME - $STARTTIME" | bc | awk -F"." '{print $1"."$2}'`
unset PNETCDF_HINTS
echo "#%$: exe_time: $TIMEDIFF"
echo "ls -lah ${OUTDIR}"
ls -lah ${OUTDIR}
echo "ls -lah ${DW_JOB_PRIVATE}"
ls -lah ${DW_JOB_PRIVATE}
echo "lfs getstripe ${OUTDIR}"
lfs getstripe ${OUTDIR}
echo '-----+-----++------------+++++++++--+---'
# Staging
echo "========================== Stage =========================="
>&2 echo "========================== Stage =========================="
echo "#%$: io_driver: stage"
echo "#%$: number_of_nodes: ${NN}"
echo "#%$: number_of_procs: ${NP}"
echo "#%$: io_mode: ${u}_${v}"
echo "rm -f ${OUTDIR}/*"
rm -f ${OUTDIR}/*
echo "rm -f ${DW_JOB_STRIPED}/*"
rm -f ${DW_JOB_STRIPED}/*
export stageout_bb_path="${DW_JOB_STRIPED}"
export stageout_pfs_path="${OUTDIR}"
let IO_METHOD=2
echo "m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=${DW_JOB_STRIPED} inputbt.m4 > inputbt.data"
m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=${DW_JOB_STRIPED} inputbt.m4 > inputbt.data
STARTTIME=`date +%s.%N`
srun -n ${NP} -t ${TL} ./btio
ENDTIME=`date +%s.%N`
TIMEDIFF=`echo "$ENDTIME - $STARTTIME" | bc | awk -F"." '{print $1"."$2}'`
unset stageout_bb_path
unset stageout_pfs_path
echo "#%$: exe_time: $TIMEDIFF"
echo "ls -lah ${OUTDIR}"
ls -lah ${OUTDIR}
echo "ls -lah ${DW_JOB_STRIPED}"
ls -lah ${DW_JOB_STRIPED}
echo "lfs getstripe ${OUTDIR}"
lfs getstripe ${OUTDIR}
echo '-----+-----++------------+++++++++--+---'
# Staging Indep
echo "========================== On BB Indep =========================="
>&2 echo "========================== On BB Indep =========================="
echo "#%$: io_driver: on_bb"
echo "#%$: number_of_nodes: ${NN}"
echo "#%$: number_of_proc: ${NP}"
echo "#%$: io_mode: blocking_indep"
echo "rm -f ${OUTDIR}/*"
rm -f ${OUTDIR}/*
echo "rm -f ${DW_JOB_STRIPED}/*"
rm -f ${DW_JOB_STRIPED}/*
#export stageout_bb_path="${DW_JOB_STRIPED}"
#export stageout_pfs_path="${OUTDIR}"
let IO_METHOD=4
echo "m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=${DW_JOB_STRIPED} inputbt.m4 > inputbt.data"
m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=${DW_JOB_STRIPED} inputbt.m4 > inputbt.data
STARTTIME=`date +%s.%N`
srun -n ${NP} -t ${TL} ./btio
ENDTIME=`date +%s.%N`
TIMEDIFF=`echo "$ENDTIME - $STARTTIME" | bc | awk -F"." '{print $1"."$2}'`
#unset stageout_bb_path
#unset stageout_pfs_path
echo "#%$: exe_time: $TIMEDIFF"
echo "ls -lah ${OUTDIR}"
ls -lah ${OUTDIR}
echo "ls -lah ${DW_JOB_STRIPED}"
ls -lah ${DW_JOB_STRIPED}
echo "lfs getstripe ${OUTDIR}"
lfs getstripe ${OUTDIR}
echo '-----+-----++------------+++++++++--+---'
# LogFS
echo "========================== Logfs =========================="
>&2 echo "========================== Logfs =========================="
echo "#%$: io_driver: logfs"
echo "#%$: number_of_nodes: ${NN}"
echo "#%$: number_of_proc: ${NP}"
echo "#%$: io_mode: blocking_coll"
echo "rm -f ${OUTDIR}/*"
rm -f ${OUTDIR}/*
export PNETCDF_HINTS="logfs_replayonclose=true;logfs_info_logbase=${DW_JOB_PRIVATE};logfs_flushblocksize=268435456"
let IO_METHOD=2
echo "m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=logfs:${OUTDIR} inputbt.m4 > inputbt.data"
m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=logfs:${OUTDIR} inputbt.m4 > inputbt.data
STARTTIME=`date +%s.%N`
srun -n ${NP} -t ${TL} ./btio_logfs
ENDTIME=`date +%s.%N`
TIMEDIFF=`echo "$ENDTIME - $STARTTIME" | bc | awk -F"." '{print $1"."$2}'`
unset PNETCDF_HINTS
echo "#%$: exe_time: $TIMEDIFF"
echo "ls -lah ${OUTDIR}"
ls -lah ${OUTDIR}
echo "lfs getstripe ${OUTDIR}"
lfs getstripe ${OUTDIR}
echo '-----+-----++------------+++++++++--+---'
# Data Elevator
echo "========================== DE =========================="
>&2 echo "========================== DE =========================="
echo "#%$: io_driver: de"
echo "#%$: number_of_nodes: ${NN}"
echo "#%$: number_of_proc: ${NP}"
echo "#%$: io_mode: blocking_coll"
echo "rm -f ${OUTDIR}/*"
rm -f ${OUTDIR}/*
echo "rm -f ${DW_JOB_STRIPED}/*"
rm -f ${DW_JOB_STRIPED}/*
let IO_METHOD=2
echo "m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=${OUTDIR} inputbt.m4 > inputbt.data"
m4 -D io_method=${IO_METHOD} -D n_itr=${NITR} -D dim_x=${DIMX} -D dim_y=${DIMY} -D dim_z=${DIMZ} -D out_dir=${OUTDIR} inputbt.m4 > inputbt.data
STARTTIME=`date +%s.%N`
srun -n ${NP} -t ${TL} --mem=60000 --gres=craynetwork:1 ./btio_de &
srun -n ${NP} -t ${TL} --mem=60000 --gres=craynetwork:1 /global/homes/k/khl7265/local/dataelevator_nosc/bin/dejob -i -a &
wait
ENDTIME=`date +%s.%N`
TIMEDIFF=`echo "$ENDTIME - $STARTTIME" | bc | awk -F"." '{print $1"."$2}'`
echo "#%$: exe_time: $TIMEDIFF"
echo "ls -lah ${OUTDIR}"
ls -lah ${OUTDIR}
echo "ls -lah ${DW_JOB_STRIPED}"
ls -lah ${DW_JOB_STRIPED}
echo "lfs getstripe ${OUTDIR}"
lfs getstripe ${OUTDIR}
echo '-----+-----++------------+++++++++--+---'
#let IO_METHOD=2
#if [ "x${u}" = "xnonblocking" ]; then
# let IO_METHOD=IO_METHOD+1
#fi
#if [ "x${v}" = "xindep" ]; then
# let IO_METHOD=IO_METHOD+2
#fi
done
echo "BB Info: "
module load dws
sessID=$(dwstat sessions | grep $SLURM_JOBID | awk '{print $1}')
echo "session ID is: "${sessID}
instID=$(dwstat instances | grep $sessID | awk '{print $1}')
echo "instance ID is: "${instID}
echo "fragments list:"
echo "frag state instID capacity gran node"
dwstat fragments | grep ${instID}
ENDTIME=`date +%s.%N`
TIMEDIFF=`echo "$ENDTIME - $TSTARTTIME" | bc | awk -F"." '{print $1"."$2}'`
echo "-------------------------------------------------------------"
echo "total_exe_time: $TIMEDIFF"
echo "-------------------------------------------------------------"