diff --git a/Readme.md b/Readme.md index 00addadc..84b6f9cd 100644 --- a/Readme.md +++ b/Readme.md @@ -37,7 +37,7 @@ Some contributions include: A native Java integration of the library has been realized in [GROBID](https://github.com/kermitt2/grobid) via [JEP](https://github.com/ninia/jep). -The latest DeLFT release has been tested successfully with python 3.8 and Tensorflow 2.9.3. As always, GPU(s) are required for decent training time. A GeForce GTX 1050 Ti (4GB) for instance is fine for running RNN models and BERT or RoBERTa base models. Using BERT large model is possible from a GeForce GTX 1080 Ti (11GB) with modest batch size. Using multiple GPUs (training and inference) is supported. +The latest DeLFT release __0.3.4__ has been tested successfully with python 3.8 and Tensorflow 2.9.3. As always, GPU(s) are required for decent training time. For example, a GeForce GTX 1050 Ti (4GB) is working very well for running RNN models and BERT or RoBERTa base models. Using BERT large model is no problem with a GeForce GTX 1080 Ti (11GB), including training with modest batch size. Using multiple GPUs (training and inference) is supported. ## DeLFT Documentation @@ -48,7 +48,7 @@ Visit the [DELFT documentation](https://delft.readthedocs.io) for detailed infor PyPI packages are available for stable versions. Latest stable version is `0.3.4`: ``` -pip install delft==0.3.4 +python3 -m pip install delft==0.3.4 ``` ## DeLFT Installation @@ -70,13 +70,13 @@ source env/bin/activate Install the dependencies: ```sh -pip3 install -r requirements.txt +python3 -m pip install -r requirements.txt ``` Finally install the project, preferably in editable state ```sh -pip3 install -e . +python3 -m pip install -e . ``` See the [DELFT documentation](https://delft.readthedocs.io) for usage. @@ -98,7 +98,7 @@ If you want to this work, please refer to the present GitHub project, together w title = {DeLFT}, howpublished = {\url{https://github.com/kermitt2/delft}}, publisher = {GitHub}, - year = {2018--2023}, + year = {2018--2024}, archivePrefix = {swh}, eprint = {1:dir:54eb292e1c0af764e27dd179596f64679e44d06e} } diff --git a/data/models/textClassification/copyright_gru/config.json b/data/models/textClassification/copyright_gru/config.json new file mode 100644 index 00000000..96b51199 --- /dev/null +++ b/data/models/textClassification/copyright_gru/config.json @@ -0,0 +1,20 @@ +{ + "model_name": "copyright_gru", + "architecture": "gru", + "embeddings_name": "glove-840B", + "char_embedding_size": 25, + "word_embedding_size": 300, + "dropout": 0.5, + "recurrent_dropout": 0.25, + "maxlen": 300, + "dense_size": 32, + "use_char_feature": false, + "list_classes": [ + "publisher", + "authors", + "undecided" + ], + "fold_number": 1, + "batch_size": 256, + "transformer_name": null +} \ No newline at end of file diff --git a/data/models/textClassification/copyright_gru/model_weights.hdf5 b/data/models/textClassification/copyright_gru/model_weights.hdf5 new file mode 100644 index 00000000..c53b4d89 Binary files /dev/null and b/data/models/textClassification/copyright_gru/model_weights.hdf5 differ diff --git a/data/models/textClassification/license_gru/config.json b/data/models/textClassification/license_gru/config.json new file mode 100644 index 00000000..4c347026 --- /dev/null +++ b/data/models/textClassification/license_gru/config.json @@ -0,0 +1,27 @@ +{ + "model_name": "license_gru", + "architecture": "gru", + "embeddings_name": "glove-840B", + "char_embedding_size": 25, + "word_embedding_size": 300, + "dropout": 0.5, + "recurrent_dropout": 0.25, + "maxlen": 300, + "dense_size": 32, + "use_char_feature": false, + "list_classes": [ + "CC-0", + "CC-BY", + "CC-BY-NC", + "CC-BY-NC-ND", + "CC-BY-SA", + "CC-BY-NC-SA", + "CC-BY-ND", + "copyright", + "other", + "undecided" + ], + "fold_number": 1, + "batch_size": 256, + "transformer_name": null +} \ No newline at end of file diff --git a/data/models/textClassification/license_gru/model_weights.hdf5 b/data/models/textClassification/license_gru/model_weights.hdf5 new file mode 100644 index 00000000..433e73c8 Binary files /dev/null and b/data/models/textClassification/license_gru/model_weights.hdf5 differ diff --git a/data/textClassification/licenses/copyrights-licenses-data-validated.csv b/data/textClassification/licenses/copyrights-licenses-data-validated.csv new file mode 100644 index 00000000..4945d6df --- /dev/null +++ b/data/textClassification/licenses/copyrights-licenses-data-validated.csv @@ -0,0 +1,680 @@ +"Content from this work may be used under the terms of the Creative Commons Attribution 3.0 license. 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The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.",authors,CC-BY-NC +Distributed under a Creative Commons Attribution -ShareAlike| 4.0 International Licens,undecided,CC-BY-SA +Distributed under a Creative Commons Attribution -ShareAlike| 4.0 International Licens,undecided,CC-BY-SA +Distributed under a Creative Commons Attribution -ShareAlike| 4.0 International Licens,undecided,CC-BY-SA +Distributed under a Creative Commons Attribution -ShareAlike| 4.0 International Licens,undecided,CC-BY-SA +a n o p e n a c c e s s j o u r n a l,undecided,undecided +s://github.com/neuroanatomy/ FerretDiffusionTractTracingComparis,undecided,undecided +© 2019 Massachusetts Institute of Technology Published under a Creative Commons Attribution 4.0 International (CC BY 4.0) license The MIT Press,publisher,CC-BY +Distributed under a Creative Commons Attribution -ShareAlike| 4.0 International Licens,undecided,CC-BY-SA +© IAEME Publicati,publisher,undecided +Isothermal Reduction Smelting of Mixed Chromite-Laterite Samples with Coconut Charcoal as Reductant under Argon Atmosphere in a Vertical Electric Arc Furnace https://iaeme.com/Home/journal/IJMET,undecided,undecided +Creative Commons -Attribution -Partage dans les Mêmes Conditions 4.0 International -CC BY-SA 4.0 https://creativecommons.org/licenses/by-sa/4.0,undecided,CC-BY-SA +"Copyright: © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +© Copyright iMedPub | This article is available in: https://www.imedpub.com/journal-cognitive-neuropsychology/ 2021,publisher,undecided +"Managing Editor, Cellular and Molecular Medicine: Open access, UK",undecided,undecided +"Managing Editor, Cellular and Molecular Medicine: Open access, UK",undecided,undecided +Copyright © All rights are reserved by Maé Gui,authors,copyright +"© 2023 The Author(s). Published with license by Taylor & Francis Group, LLC. View supplementary material",authors,undecided +"© 2023 The Author(s). Published with license by Taylor & Francis Group, LLC. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.",authors,CC-BY +© 2010 IFVC,publisher,undecided +"Copyright © 2022 Saccaro, Pico, Chadenat, Richard, Launay, Bastenaire, Jullien, Lambert, Feuga, Macquet, Callebert, Lambert and Spreux-Varoquaux. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"Copyright: © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +Distributed under a Creative Commons Attribution | 4.0 International licence https://creativecommons.org/licenses/by/4.0/ 1,undecided,CC-BY +"Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to Creative Commons licence, and indicate if changes were made. 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Published by Elsevier Ltd. This is an open access article under the CC BY license (http://creativecommons.org/ licenses/by/4.0/).,authors,CC-BY +Standardized Workflow Based on the STAVIRO Unbaited Underwater Video System for Monitoring,undecided,undecided +"Copyright © 2021 Pelletier, Roos, Bouchoucha, Schohn, Roman, Gonson, Bockel, Carpentier, Preuss, Powell, Garcia, Gaboriau, Cadé, Royaux, Le Bras and Reecht. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +© 2022 The Author(s). Published by Elsevier B.V. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).,authors,CC-BY +© 2022 The Author(s). Published by Elsevier B.V. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).,authors,CC-BY +"© 2023 Zaid, Sala, Despins, Heise, Popescu, Skubic, Ahmad, Emter, Huxley and Guidoboni. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +© 2023 Author(s).,authors,undecided +"© 2023 Author(s). All article content, except where otherwise noted, is licensed under a Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).",authors,CC-BY +© Author(s) 2023,authors,undecided +© Author(s) 2023,authors,undecided +"© 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).",authors,CC-BY +"© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +s://www.mdpi.com/journal/plants,undecided,undecided +"14693178, 2009, 7, Downloaded from https://www.embopress.org/doi/10.1038/embor.2009.88 by Cochrane France, Wiley Online Library on [16/02/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons Licens",undecided,undecided +"© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +© Author(s) 2019. This work is distributed under the Creative Commons Attribution 4.0 License.,authors,CC-BY +© 2023 The Authors. Published by Elsevier B.V. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).,authors,CC-BY-NC-ND +V C The Author(s) 2019. Published by Oxford University Press on behalf of the International Epidemiological Association.,authors,undecided +"This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.",undecided,CC-BY +"Copyright: © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"Copyright: © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"© The Author(s) 2023. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article' s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article' s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.",authors,CC-BY +© The Author(s) 2023,authors,undecided +"Copyright: © 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +© 2021 The Authors. Evolutionary Applications published by John Wiley & Sons Ltd,authors,undecided +"by Cochrane France, Wiley Online Library on [07/11/2022]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons Licens",undecided,undecided +"by Cochrane France, Wiley Online Library on [07/11/2022]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons Licens",undecided,undecided +"Copyright © 2003 by the American Society for Biochemistry and Molecular Biology, Inc.",publisher,undecided +This is an open access article under the CC BY license.,undecided,CC-BY +This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).,undecided,CC-BY +"© 2023 Bellingeri, Bevacqua, Sartori, Turchetto, Scotognella, Alfieri, Nguyen, Le, Nguyen and Cassi. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author (s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +Copyright © 2023 Esnault et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.,authors,CC-BY +"Open Access article, published by EDP Sciences, under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. This article is published in open access under the Subscribe-to-Open model. Subscribe to A&A to support open access publication.",undecided,CC-BY +"This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. © 2023 The Authors. Obesity Reviews published by John Wiley & Sons Ltd on behalf of World Obesity Federation.",authors,CC-BY +"1467789x, 0, Downloaded from https://onlinelibrary.wiley.com/doi/10.1111/obr.13565 by Inrae -Dipso, Wiley Online Library on [03/04/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons Licens",undecided,undecided +"Copyright © 2022 Pouget, Dunyach-Remy, Bernardi, Provot, Tasse, Sotto and Lavigne. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"© 2023 Ve ´lez, Capilla and Lutfi. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +Creative Commons -Attribution -Pas d'Utilisation Commerciale -Pas de Modification 4.0 International -CC BY-NC-ND 4.0 https://creativecommons.org/licenses/by-nc-nd/4.0,undecided,CC-BY-NC-ND +© 2022 The Author(s). Published by Elsevier B.V. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).,authors,CC-BY-NC-ND +"© 2022 Papakonstantinou et al.; the authors have retained copyright and granted the Journal right of first publication; the work has been simultaneously released under a Creative Commons Attribution Licence, which allows others to share the work, while acknowledging the original authorship and initial publication in this Journal. The full licence notice is available at http://journal.embnet.org.",authors,CC-BY +"© 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).",authors,CC-BY +"2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).",authors,CC-BY +"© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +s://www.mdpi.com/journal/pharmaceuticals,undecided,undecided +"© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +© The Author(s) 2020,authors,undecided +"© 2017 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).",authors,CC-BY +"Copyright: © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"(2023), Diversified crop rotations and organic amendments as strategies for increasing soil carbon storage and stabilisation in UK arable systems.",undecided,undecided +"© 2023 Zani, Manning, Abbott, Taylor, Cooper and Lopez-Capel. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"(2023) Spatio-temporal diversity of dietary preferences and stress sensibilities of early and middle Miocene Rhinocerotidae from Eurasia: impact of climate changes, Peer Community",undecided,undecided +This article is licensed under the Creative Commons Attribution 4.0 License.,undecided,CC-BY +"© 2015 The Author(s) . Published by Taylor & Francis This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.",authors,CC-BY +© 2023,undecided,undecided +ESO 2017,undecided,undecided +"Copyright © 2021 Haddad, Fontanini, Bellali, Takakura, Ominami, Hisada, Hadjadj, Rolain, Raoult and Bou Khalil. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"© The Author(s) 2023. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article' s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article' s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http:// creat iveco mmons. org/ licen ses/ by/4. 0/. The Creative Commons Public Domain Dedication waiver (http:// creat iveco mmons. org/ publi cdoma in/ zero/1. 0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.",authors,CC-BY +© 2019 International Society for Antimicrobial Chemotherapy. Published by Elsevier Ltd. All rights reserved.,publisher,copyright +"© 2022 Post et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.",authors,CC-BY +"Copyright: © 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"© 2022 Avian et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.",authors,CC-BY +License Authors of papers retain copyright and release the work under a Creative Commons Attribution 4.0 International License (CC BY 4.0).,authors,CC-BY +"C The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.",authors,CC-BY +"© 2022 Randrianarivo et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.",authors,CC-BY +"Copyright: © 2021 by the authors. Li-censee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and con-ditions of the Creative Commons At-tribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +© 2023 The Author(s). Published by Elsevier B.V. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).,authors,CC-BY +"© The Author(s) 2022. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article' s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article' s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http:// creat iveco mmons. org/ licen ses/ by/4. 0/. The Creative Commons Public Domain Dedication waiver (http:// creat iveco mmons. org/ publi cdoma in/ zero/1. 0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.",authors,CC-BY +"This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.",undecided,CC-BY +© 2022. Published by The Company of Biologists Ltd |,publisher,undecided +"Copyright: © 2021 by the authors. Li-censee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and con-ditions of the Creative Commons At-tribution (CC BY) license (http://crea-tivecommons.org/licenses/by/4.0/).",authors,CC-BY +"© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http:// creat iveco mmons. org/ licen ses/ by/4. 0/. © The Author(s) 2022",authors,CC-BY +"© The Author(s), 2022. Published by Cambridge University Press for the Arizona Board of Regents on behalf of the University of Arizona. This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.",authors,CC-BY +© 2023 The Author(s). Published by Elsevier B.V. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).,authors,CC-BY +"Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http:// creat iveco mmons. org/ licen ses/ by/4. 0/. © The Author(s) 2022",authors,CC-BY +"Copyright: © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"© Sureshbabu, Smirnova, Karthikeyan, Moniruzzaman, Kalaiselvi, Nam, Go and Min. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"Copyright: © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"Kamar N (2021) Tacrolimus Intrapatient Variability After Switching From Immediate or Prolonged-Release to Extended-Release Formulation, After an Organ Transplantation.",undecided,undecided +"© 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).",authors,CC-BY +"Copyright: © 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"ª 2023 The Authors. Published under the terms of the CC BY 4.0 license. EMBO Molecular Medicine e17723 | 2023 17574684, 0, Downloaded from https://www.embopress.org/doi/10.15252/emmm.202317723 by Institut Pasteur, Wiley Online Library on [03/10/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons License License: This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.",authors,CC-BY +/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons Licens,undecided,undecided +"Copyright Jean-Yves Rasplus et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.",authors,CC-BY +"Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http:// creativecommons.org/licenses/by/4.0/. © The Author(s) 2023",authors,CC-BY +"© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +© Under License of Creative Commons Attribution 3.0 License | This article is available in: http://www.aclr.com.es,undecided,CC-BY +© Under License of Creative Commons Attribution 3.0 License Annals of Clinical and Laboratory Research,undecided,CC-BY +© Under License of Creative Commons Attribution 3.0 Licens,undecided,CC-BY +"© The Author(s) 2023. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article' s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article' s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http:// creat iveco mmons. org/ licen ses/ by/4. 0/. The Creative Commons Public Domain Dedication waiver (http:// creat iveco mmons. org/ publi cdoma in/ zero/1. 0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.",authors,CC-BY +"This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. © 2023 The Authors.",authors,CC-BY-NC-ND +© Copyright IT Medical Team | This article is available in: https://www.itmedicalteam.pl/health-science.html 2023,publisher,undecided +© Under License of Creative Commons Attribution 3.0 Licens,undecided,CC-BY +© 2022 The Authors. Published by Elsevier B.V. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).,authors,CC-BY +"© 2016 The Author(s). licensee Springer on behalf of EPJ. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited.",authors,CC-BY +"© The Author(s) 2023. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article' s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article' s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http:// creat iveco mmons. org/ licen ses/ by/4. 0/. The Creative Commons Public Domain Dedication waiver (http:// creat iveco mmons. org/ publi cdoma in/ zero/1. 0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.",authors,CC-BY +"Ó2023TheAuthors.FEBSOpenBiopublishedbyJohnWiley&SonsLtdonbehalfofFederationofEuropeanBiochemicalSocieties.ThisisanopenaccessarticleunderthetermsoftheCreativeCommonsAttributionLicense,whichpermitsuse,distributionandreproductioninanymedium,providedtheoriginalworkisproperlycited.",authors,CC-BY +Ó2023TheAuthors.FEBSOpenBiopublishedbyJohnWiley&SonsLtdonbehalfofFederationofEuropeanBiochemicalSocieties.,authors,undecided +Ó2023TheAuthors.FEBSOpenBiopublishedbyJohnWiley&SonsLtdonbehalfofFederationofEuropeanBiochemicalSocieties.,authors,undecided +"s an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",undecided,CC-BY +"This is an open access article under the terms of the Creative Commons Attribution-NonCommercial License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. © 2022 The Authors. Ecological Entomology published by John Wiley & Sons Ltd on behalf of Royal Entomological Society.",authors,CC-BY-NC +/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons Licens,undecided,undecided +"Copyright Lin, Kos et al. This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.",authors,CC-BY +"© The Author(s). 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.",authors,CC-BY +"© 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"s://www.mdpi.com/journal/energies 'optimization', are used. Thesaurus files can help improve analysis accuracy by integrating distinct variations of words, author name(s), and so on. Table 1. Web of Science core collection. Title, Author, Sourc",undecided,undecided +Cited References Funding Information Author(s) Addresses Cited Reference Count Publisher Information Source Affiliations Usage Count Open Access Conf.Info/Sponsors Document Type Hot Paper Page Count Times Cited Count Keywords Highly Cited Source Abbrev. Accession Number WoS Categories IDS Number Authors Identifiers Research Areas Language ISSN WoS Editions (print only) PubMed ID,undecided,undecided +"© 2023 Kress, Poch, Lecompte and Thompson. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +© 2022 The Authors. Comprehensive Reviews in Food Science and Food Safety published by Wiley Periodicals LLC,authors,undecided +/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons Licens,undecided,undecided +/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons Licens,undecided,undecided +(2023). Alcohol-free and low-alcohol beers: Aroma chemistry and sensory characteristics.,undecided,undecided +/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons Licens,undecided,undecided +"Copyright © 2020 Bourdiol, Hennequin, Peyron and Woda. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"© Girardie, Bonneau, Billon, Bailly, David and Canario. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"C The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.",authors,CC-BY +"© The Author(s) 2022. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article' s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article' s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecom-mons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.",authors,CC-BY +Copyright © 2022 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.,authors,CC-BY +"(2016). This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0",undecided,CC-BY +"Methods: The search was conducted through PubMed, EMBASE, and MEDLINE databases from 2000 to 2021 using the 2009 Preferred Reporting Items for Systematic Reviews and Meta-Analyses Protocol (PRISMA).",undecided,undecided +"© The Author(s) 2022. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article' s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article' s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http:// creat iveco mmons. org/ licen ses/ by/4. 0/.",authors,CC-BY +"Copyright © 2021 Lutz, Pérez Arévalo, Ioannidis, Stirmlinger, Demestre, Delorme, Bourgeron and Boeckers. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"© 2022 Gyurchev, Coral-Medina, Weening, Almayouf, Kuijpers, Nevoigt and Louis. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"© 2022 Ballutaud et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.",authors,CC-BY +"This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. © 2022 The Authors. Global Change Biology published by John Wiley & Sons Ltd.",authors +© The Author(s) 2023,authors,CC-BY +"© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"© The Author(s) 2022. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article' s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article' s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http:// creat iveco mmons. org/ licen ses/ by/4. 0/. The Creative Commons Public Domain Dedication waiver (http:// creat iveco mmons. org/ publi cdoma in/ zero/1. 0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.",authors,CC-BY +"© The Author(s) 2021. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article' s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article' s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http:// creat iveco mmons. org/ licen ses/ by/4. 0/. The Creative Commons Public Domain Dedication waiver (http:// creat iveco mmons. org/ publi cdoma in/ zero/1. 0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.",authors,CC-BY +"© 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).",authors,CC-BY +"Naturae est une revue en flux continu publiée par les Publications scientifiques du Muséum, Paris Naturae is a fast track journal published by the Museum Science Press, Paris Les Publications scientifiques du Muséum publient aussi / The Museum Science Press also publish :",undecided,undecided +"diff.pub@mnhn.fr / https://sciencepress.mnhn.fr © Publications scientifiques du Muséum national d'Histoire naturelle, Paris, 2022 ISSN (électronique / electronic) : 1638-9387 NATURAE • 2022 (5) © Publications scientifiques du Muséum national d'Histoire naturelle, Paris.",publisher,undecided +"This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. © 2023 The Authors. Obesity Reviews published by John Wiley & Sons Ltd on behalf of World Obesity Federation.",authors,CC-BY +"OpenAccessThisarticleislicensedunderaCreativeCommonsAttribution4.0InternationalLicense,whichpermitsuse,sharing,adaptation,distributionandreproductioninanymediumorformat,aslongasyougiveappropriatecredittotheoriginalauthor(s)andthesource,providealinktotheCreativeCommonslicence,andindicateifchangesweremade.Theimagesorotherthirdpartymaterialinthisarticleareincludedinthearticle'sCreativeCommonslicence,unlessindicatedotherwiseinacreditlinetothematerial.Ifmaterialisnotincludedinthearticle'sCreativeCommonslicenceandyourintendeduseisnotpermittedbystatutoryregulationorexceedsthepermitteduse,youwillneedtoobtainpermissiondirectlyfromthecopyrightholder.Toviewacopyofthislicence,visithttp://creativecommons.org/licenses/by/4.0/.©TheAuthor(s)2023",authors,CC-BY +"© The Author(s). 2017 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.",authors,CC-BY +ª 2023 The Author(s). 1 This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).,authors,CC-BY-NC-ND +"© 2023 Lasne, McCoustra, Rosu-Finsen, Romanias and Lefèvre. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +© The Authors 2023,authors,undecided +"Open Access article, published by EDP Sciences, under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. This article is published in open access under the Subscribe to Open model. Subscribe to A&A to support open access publication.",undecided,CC-BY +"C The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. This is an Open Access article distributed under the terms of the Creati v e Commons Attribution License (http: // creati v ecommons.org / licenses / by / 4.0 / ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.",authors,CC-BY +"C The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. This is an Open Access article distributed under the terms of the Creati v e Commons Attribution License (http: // creati v ecommons.org / licenses / by / 4.0 / ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.",authors,CC-BY +"Copyright: © 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +© Author(s) 2023. This work is distributed under the Creative Commons Attribution 4.0 License.,authors,CC-BY +© The Author(s) 2023,authors,undecided +"© 2023 Whiteside, Dupouy, Singh, Bani, Tan and Frouin. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"Open Access, Copyright CERN, for the benefit of the LHCb Collaboration. Article funded by SCOAP 3 .",publisher,undecided +© 2021 The Authors. Food and Energy Security published by John Wiley & Sons Ltd.,authors,undecided +"Copyright Pedro Nunes et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.",authors,CC-BY +"Copyright: © 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"© The Author(s) 2023. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article' s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article' s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http:// creat iveco mmons. org/ licen ses/ by/4. 0/. The Creative Commons Public Domain Dedication waiver (http:// creat iveco mmons. org/ publi cdoma in/ zero/1. 0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.",authors,CC-BY +"Copyright: © 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +©2017 American Physical Society,publisher,undecided +© The Author(s) 2023,authors,undecided +"© 2021 George et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.",authors,CC-BY +"© 2023 by the author. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +© 2023 Published by Elsevier B.V.,publisher,undecided +"© Jimenez-Lopez, Clemente, Ochatt, Vaz Patto, Von Wettberg and Smýkal. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"© 2021 The Authors. Advanced Photonics Research published by Wiley-VCH GmbH. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.",authors,CC-BY +"© 2021 The Authors. Advanced Photonics Research published by Wiley-VCH GmbH 26999293, 2021, 11, Downloaded from https://onlinelibrary.wiley.com/doi/10.1002/adpr.202100113 by Cochrane France, Wiley Online Library on [28/01/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons Licens",authors,undecided +"© 2021 The Authors. Advanced Photonics Research published by Wiley-VCH GmbH 26999293, 2021, 11, Downloaded from https://onlinelibrary.wiley.com/doi/10.1002/adpr.202100113 by Cochrane France, Wiley Online Library on [28/01/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons Licens",authors,undecided +"© 2021 The Authors. Advanced Photonics Research published by Wiley-VCH GmbH 26999293, 2021, 11, Downloaded from https://onlinelibrary.wiley.com/doi/10.1002/adpr.202100113 by Cochrane France, Wiley Online Library on [28/01/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons License Research data are not shared.",authors,undecided +"Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Cre-ative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons license and your intended use is not per-mitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. © The Author(s) 2022",authors,CC-BY +© 2023 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).,authors,CC-BY +"Copyright: © 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"Copyright © 2021 Beatriz Tadeo Fuica, Olivier Buisson, Claude Mussou This work is licensed under the Creative Commons BY License. http://creativecommons.org/licenses/by/4.0/ 97 Watching Historical Films Through AI",authors,CC-BY +"© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"Copyright: © 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"Copyright: © 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +© 2018 Published by Elsevier Ltd on behalf of International Society for Chemotherapy of Infection and Cancer.,publisher,undecided +© 2018 Published by Elsevier Ltd on behalf of International Society for Chemotherapy of Infection and Cancer.,publisher,undecided +"Copyright: © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).",authors,CC-BY +"© 2023 Cecconi, Louis, Bonnin, Loh and Taylor. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"© 2023. The Authors. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.",authors,CC-BY +"21699356, 2023, 3, Downloaded from https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2022JB025254 by Cochrane France, Wiley Online Library on [25/02/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons License 21699356, 2023, 3, Downloaded from https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2022JB025254 by Cochrane France, Wiley Online Library on [25/02/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons Licens",undecided,undecided +"This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. © 2023 The Authors. Journal of Ecology published by John Wiley & Sons Ltd on behalf of British Ecological Society.",authors,CC-BY +"© The Author(s). 2019 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.",authors,CC-BY +"Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Cre-ative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons license and your intended use is not per-mitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article. © The Author(s) 2022",authors,CC-BY +"© 2023 Berlioz et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.",authors,CC-BY +"© 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).",authors,CC-BY +"Copyright: © 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"© The Author(s) 2022. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article' s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article' s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http:// creat iveco mmons. org/ licen ses/ by/4. 0/.",authors,CC-BY +"© The Author(s). 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.",authors,CC-BY +© Cambridge University Press 2017,publisher,undecided +"© 2023 De Meyer and Carlier. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"Copyright: © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +© Author(s) 2023. This work is distributed under the Creative Commons Attribution 4.0 License.,authors,CC-BY +"Copyright: © 2022 by the authors. Li-censee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and con-ditions of the Creative Commons At-tribution (CC BY) license (http://crea-tivecommons.org/licenses/by/4.0/).",authors,CC-BY +© 2023 The Author(s). Published by Elsevier Ltd. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).,authors,CC-BY +Copyright © 2021 by the author(s). Published here under license by the Resilience Alliance.,authors,undecided +"Copyright © 2022 Perrey. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +© Under License of Creative Commons Attribution 3.0 License | This article is available in: http://cellular-molecular-medicine.imedpub.com,undecided,CC-BY +© Under License of Creative Commons Attribution 3.0 License Cellular & Molecular Medicine: Open access,undecided,CC-BY +"This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. © 2023 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.",authors,CC-BY +"20457758, 2023, 1, Downloaded from https://onlinelibrary.wiley.com/doi/10.1002/ece3.9741 by Cochrane France, Wiley Online Library on [15/02/2023]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons Licens",undecided,undecided +"© 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).",authors,CC-BY +"© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +© The Author(s) 2022,authors,undecided +"This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"(2022) SARS-CoV-2 Vaccination and Protection Against Clinical Disease: A Retrospective Study,",undecided,undecided +"Copyright © 2022 Fournier, Houhamdi, Colson, Cortaredona, Delorme, Cassagne, Lagier, Chaudet, Tissot-Dupont, Giraud-Gatineau, Fenollar, Million and Raoult. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"© 2023 Soghomonian, Dutour, Kachenoura, Thuny, Lasbleiz, Ancel, Cristofari, Jouve, Simeoni, Kober, Bernard and Gaborit. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"© 2022 Audemard-Verger et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.",authors,CC-BY +"© The Author(s) 2020. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article' s Creative Commons licence, unless indicated otherwise in a credit line to the mate-rial. If material is not included in the article' s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http:// creat iveco mmons .org/licen ses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creat iveco mmons .org/publi cdoma in/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.",authors,CC-BY +© The Author(s) 2021. This article is published with open access,authors,undecided +"© Wang, Yu and Magnier. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"Copyright: © 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"© 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"Copyright: © 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +© 2023 The Authors This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author's institution.,authors,CC-BY +"© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +s://www.mdpi.com/journal/metabolites,undecided,undecided +"This is an Open Access article distributed under the terms of the Creative Commons Attribution License CC-BY (https://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, except for commercial purposes, provided the original work is properly cited.",undecided,CC-BY +"Copyright: © 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"Ó 2022 The Authors. FEBS Letters published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. 18733468, 0, Downloaded from https://febs.onlinelibrary.wiley.com/doi/10.1002/1873-3468.14465 by Ineris Service Facturation, Wiley Online Library on [21/11/2022]. See the Terms and Conditions (https://onlinelibrary.wiley.com/terms-and-conditions) on Wiley Online Library for rules of use; OA articles are governed by the applicable Creative Commons Licens",authors,CC-BY +"© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +Chromosome C. maxima C. medica C. reticulata P. trifoliata Total,undecided,undecided +"© 2022 Author(s). All article content, except where otherwise noted, is licensed under a Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).",authors,CC-BY +© Author(s) 2022,authors,undecided +"Copyright © 2019 Abichou, La Corte, Hubert, Orriols, Gaston-Bellegarde, Nicolas and Piolino. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +© 2023 Published by Elsevier Inc.,publisher,undecided +"© 2023 The Author(s). This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (CC-BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. See http://creativecommons.org/licenses/by/4.0/.",authors,CC-BY +"© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +s://www.mdpi.com/journal/toxins,undecided,undecided +"Copyright: © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http:// creat iveco mmons. org/ licen ses/ by/4. 0/. © The Author(s) 2021",authors,CC-BY +"© Mishra, Louhichi, Genovese and Gomez y Paloma. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"© 2023 Le Quinio et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.",authors,CC-BY +"© The Author(s) 2022. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article' s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article' s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http:// creat iveco mmons. org/ licen ses/ by/4. 0/.",authors,CC-BY +"Owned by the authors, published by EDP Sciences, 2013",authors,undecided +"© 2022 Bellet, Laurent, Bornard, Hoang and Richard. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"© 2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +"Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/ licenses/by/4.0/. © The Author(s) 2022",authors,CC-BY +"© 2022 Brooks, Arleevskaya and Renaudineau. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.",authors,CC-BY +"This is an open-access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Copyright © 2022 The Korean Association for Radiation Protecti",publisher,CC-BY-NC +"Open Forum Infectious Diseases ® © The Author(s) 2022. Published by Oxford University Press on behalf of Infectious Diseases Society of America. This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (https://creativecommons. org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals. permissions@oup.com",authors,CC-BY-NC-ND +"Copyright: © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/).",authors,CC-BY +s://www.mdpi.com/journal/cells,undecided,undecided +C. All authors have read and agreed to the published version of the manuscript.,undecided,undecided +Ó The Author(s) 2016. This article is published with open access at Springerlink.com,authors,undecided +© 2023 Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/ licenses/by-nc-nd/4.0/).,publisher,CC-BY-NC-ND +© 2023 Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).,publisher,CC-BY-NC-ND +Ó The Author(s) 2021,undecided,undecided +"8 tl Copyright 2017, Sp ringer Nature.",publisher,undecided +© 2022 Elsevier Inc. All rights reserved.,publisher,copyright +© 2022 Elsevier Inc. All rights reserved.,publisher,copyright +2006 Society for Industrial and Applied Mathematics,publisher,undecided +© 2023 Published by Elsevier Inc. This is an open access article under the CC BY license ( http://creativecommons.org/licenses/by/4.0/ ) Please cite this article as:,publisher,CC-BY +"Copyright © 2013 Boudali Ouarzazi et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.",authors,CC-BY +Copyright © 2013 SciRes. WET Copyright © 2013 SciRes. WET Copyright © 2013 SciRes.,publisher,copyright +Copyright © 2023 Proutière et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.,authors,CC-BY +© 2022 THE AUTHORS. Published by Elsevier Inc on behalf of American Society for Biochemistry and Molecular Biology. This is an open access article under the CC BY license (http://creativecommons.org/ licenses/by/4.0/).,authors,CC-BY +© 2022 THE AUTHORS. Published by Elsevier Inc on behalf of American Society for Biochemistry and Molecular Biology. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).,authors,CC-BY +© 2018 International Society for Chemotherapy of Infection and Cancer. Published by Elsevier Ltd. All rights reserved.,publisher,copyright +© 2018 International Society for Chemotherapy of Infection and Cancer. Published by Elsevier Ltd. All rights reserved.,publisher,copyright +© 2023 John Wiley & Sons Ltd.,publisher,undecided +"© Springer Science+Business Media, LLC, part of Springer Nature 2019",publisher,undecided +G2015 Macmillan Publishers Limited. All rights reserved,publisher,copyright +G2015 Macmillan Publishers Limited. All rights reserved,publisher,copyright +G2015 Macmillan Publishers Limited. All rights reserved,publisher,copyright +© 2013 Macmillan Publishers Limited. All rights reserved,publisher,copyright +© 2013 Macmillan Publishers Limited. All rights reserved,publisher,copyright +2007 Kluwer Academic Publishers.,publisher,undecided +Distributed under a Creative Commons Attribution -ShareAlike| 4.0 International Licens,undecided,CC-BY-SA +© 2020 Wageningen Academic Publishers,publisher,undecided +© 2014 Elsevier B.V. All rights reserved.,publisher,copyright +© 2014 Elsevier B.V. All rights reserved.,publisher,copyright +m / l o c a t e / i j f o o d m i c r ,undecided,undecided +© 2020 | cb Creative Commons Attribution 4.0 International Public Licens,undecided,CC-BY +d M a n u s c r i p ,undecided,undecided +© 2014 Published by Elsevier B.V.,publisher,undecided +© 2014 Published by Elsevier B.V.,publisher,undecided +© published by Elsevier. This manuscript is made available under the Elsevier user license https://www.elsevier.com/open-access/userlicense/1.0/ Version of Record: https://www.sciencedirect.com/science/article/pii/S0308814621011109 Manuscript_9cf101268b6c75b5fde18515959d293a,publisher,other +m / l o c a t e / c l n u,undecided,undecided +Crown Copyright © 2023 Published by Elsevier Ltd. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/ 4.0/).,publisher,CC-BY-NC-ND +Crown Copyright © 2023 Published by Elsevier Ltd. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). IL6 C: 0.43 P < 0.0001 N: 3113 IL10 C: 0.15 C: 0.21 P < 0.0001 P < 0.0001 N: 858 N: 858 IL1RA C: 0.27 C: 0.25 P < 0.0001 P < 0.0001 N: 442 N: 434 TNFa C: 0.14 C: 0.26 C: 0.32 C: 0.15 P < 0.0001 P < 0.0001 P < 0.0001 P: 0.002 N: 1302 N: 1295 N: 856 N: 439 sTNFR1 C: 0.31 C: 0.31 C: 0.26 C: 0.23 P < 0.0001 P < 0.0001 P < 0.0001 P < 0.0001 N: 739 N: 722 N: 0 N: 409 N: 413 sTNFR2 C: 0.26 C: 0.30 C: 0.28 C: 0.30 C: 0.72 P < 0.0001 P < 0.0001 P < 0.0001 P < 0.0001 P < 0.0001 N: 748 N: 731 N: 0 N: 409 N: 413 N: 716 Leptin C: 0.31 C: 0.22 C: 0.03 C: 0.14,publisher,CC-BY-NC-ND +C: 0.34 P < 0.0001 P < 0.0001 P: 0.69 P: 0.0001 P < 0.0001 P: 0.0005 P: 0.009,undecided,undecided +C: 0.31 C: 0.95 P < 0.0001 P: 0.32 P < 0.0001 P < 0.0001 P < 0.0001 N: 1563 N: 242 N: 0 N: 0 N: 0 N: 2 N: 2 N: 1556 N: 986 N: 1574 Age a C: 0.15 C: 0.25 C: 0.09 C: 0.02 C: 0.20 C: 0.27 C: 0.25 C: 0.07 C: 0.07 C: 0.13 C: 0.14 P < 0.0001 P < 0.0001 P: 0.01 P: 0.61 P < 0.0001 P < 0.0001 P < 0.0001 P: 0.0009 P: 0.0368 P < 0.0001 P < 0.0001,undecided,undecided +C: 0.28 C: 0.03 C: 0.33 C: 0.15 C: 0.25 C: 0.15 C: 0.65 C: À0.44,undecided,undecided +C: 0.27 C: 0.04 C: 0.34 C: 0.16 C: 0.24 C: 0.16 C: 0.57 C: À0.43,undecided,undecided +© Elsevier Science Publishers B.V.,publisher,undecided +© Springer Science+Business Media New York 2016,publisher,undecided +© Springer Science+Business Media New York 2016,publisher,undecided +© Springer Science+Business Media New York 2016,publisher,undecided +© Springer Science+Business Media New York 2016,publisher,undecided +© Springer Science+Business Media New York 2016,publisher,undecided +© Springer Science+Business Media New York 2016,publisher,undecided +© Springer Science+Business Media New York 2016,publisher,undecided +© Springer Science+Business Media New York 2016,publisher,undecided +© Springer Science+Business Media New York 2016,publisher,undecided +© Springer Science+Business Media New York 2016,publisher,undecided +© Springer Science+Business Media New York 2016,publisher,undecided +© Springer Science+Business Media New York 2016,publisher,undecided +"© Springer Science+Business Media, LLC 2012",publisher,undecided +© Oxford University Press/Cuyl,publisher,undecided +© Oxford University Press,publisher,undecided +"© éditions Le Manuscrit, mars 2023",publisher,undecided +"© Naoki Masuda and Christian L. Vestergaard 2022 This work is in copyright. It is subject to statutory exceptions and to the provisions of relevant licensing agreements; with the exception of the Creative Commons version the link for which is provided below, no reproduction of any part of this work may take place without the written permission of Cambridge University Press & Assessment.",authors,copyright +"© IFIP International Federation for Information Processing 2020 This work is subject to copyright. 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Permission from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertising or promotional purposes, creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works.",publisher,copyright +"© 2021 Informa UK Limited, trading as Taylor & Francis Group",publisher,undecided +"© 2021 Informa UK Limited, trading as Taylor & Francis Group",publisher,undecided +"© 2021 John Wiley & Sons, Ltd.",publisher,undecided +"© 2021 John Wiley & Sons, Ltd.",publisher,undecided +© 2021 Cisa Publisher. Open access article under CC BY-NC-ND licens,publisher,CC-BY-NC-ND +© 2021 Cisa Publisher. Open access article under CC BY-NC-ND licens,publisher,CC-BY-NC-ND +© 2021 Cisa Publisher. Open access article under CC BY-NC-ND licens,publisher,CC-BY-NC-ND +"Copyright Ⓧ c EPLA, 2016",publisher,undecided +"License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published at Nature Climate Change on July 29th, 2021.",undecided,CC-BY +License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full Licens,undecided,CC-BY +License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full Licens,undecided,CC-BY +License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full Licens,undecided,CC-BY +License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full Licens,undecided,CC-BY +License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full Licens,undecided,CC-BY +License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full Licens,undecided,CC-BY +License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full Licens,undecided,CC-BY +License:   This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full Licens,undecided,CC-BY +© © © ¢ ¤ © ¦ ¢ ¥ ¦ ¬ § © ¨ ¼ ¢ ¤ © ¦ ¶ ½ ¤ © ¬ © © § © ¢ § © § ¦ © ° © © © © ¥ ¤ § °¢ ¢ © ¥ ¢ ¥ ¢ © § © ¾ ¤ § © ª ©,undecided,undecided +Copyright ©,undecided,undecided +Copyright ©1999 by Cell Press,publisher,undecided +": « The key and novel American contribution to jurisprudence has been that begun by the Poundian paradigm and developed by the legal realists. Not only has it been an original contribution, but its legacy is the vibrant and leading role of American jurisprudence in law today. Almost all modern schools of thought owe a substantial debt to this American contribution, which is now causing legal scholars outside the United States to reorient their work and teaching », B. Leiter, « Naturalized Jurisprudence and American Legal Realism Revisited »,",undecided,undecided +"Rubrique « Atelier des territoires » sur le site du ministère de la cohésion des territoires : http://www.atelier-territoires.logement.gouv.fr/ Territoires de montagne, un séminaire de travail et d'échanges, 20-21 juin 2019, La Bresse, https://www.cerema.fr/fr/actualites/territoires-montagne-seminaire-travail-echanges-20-21-jui",undecided,undecided \ No newline at end of file diff --git a/delft/applications/licenseClassifier.py b/delft/applications/licenseClassifier.py new file mode 100644 index 00000000..d45aaaf0 --- /dev/null +++ b/delft/applications/licenseClassifier.py @@ -0,0 +1,440 @@ +import json +from delft.utilities.Embeddings import Embeddings +from delft.utilities.Utilities import split_data_and_labels +from delft.utilities.numpy import concatenate_or_none, shuffle_triple_with_view +from delft.textClassification.reader import vectorize as vectorizer +from delft.textClassification.reader import normalize_classes, load_texts_and_classes_pandas_no_id +import delft.textClassification +from delft.textClassification import Classifier +import argparse +import time +from delft.textClassification.models import architectures +import numpy as np + +""" + Two multiclass classifiers to be used in combination with Grobid to classify a license/copyrights section + extracted from a scientific article into two dimensions: + - copyright owner: publisher, authors or undecidable (changed from NA to avoid issues with pandas) + - license associated to the article file: explicit copyrights (no restriction), creative commons licenses + (CC-0, CC-BY, CC-BY-NC, etc.), other, or undecidable (changed from NA to avoid issues with pandas) + + Note: when the license is undecidable, this means normal copyrights when a copyright owner exists. +""" + +list_classes_copyright = ["publisher", "authors", "undecided"] +class_weights_copyright = { 0: 1., + 1: 1., + 2: 1. } +list_classes_licenses = ["CC-0", "CC-BY", "CC-BY-NC", "CC-BY-NC-ND", "CC-BY-SA", "CC-BY-NC-SA", "CC-BY-ND", "copyright", "other", "undecided"] +class_weights_licenses = { 0: 1., 1: 1., 2: 1., 3: 1., 4: 1., 5: 1., 6: 1., 7: 1., 8: 1., 9: 1. } + + +def configure(architecture): + batch_size = 256 + maxlen = 300 + patience = 5 + early_stop = True + max_epoch = 60 + + # default bert model parameters + if architecture == "bert": + batch_size = 16 + early_stop = False + max_epoch = 6 + maxlen = 200 + + return batch_size, maxlen, patience, early_stop, max_epoch + + +def train(embeddings_name, fold_count, architecture="gru", transformer=None): + print('loading multiclass copyright/license dataset...') + xtr, y_copyrights = _read_data('data/textClassification/licenses/copyrights-licenses-data-validated.csv', data_type="copyrights") + + report_training_copyrights(y_copyrights) + + # copyright ownwer classifier + model_name = 'copyright_'+architecture + batch_size, maxlen, patience, early_stop, max_epoch = configure(architecture) + + model = Classifier(model_name, architecture=architecture, list_classes=list_classes_copyright, max_epoch=max_epoch, fold_number=fold_count, patience=patience, + use_roc_auc=True, embeddings_name=embeddings_name, batch_size=batch_size, maxlen=maxlen, early_stop=early_stop, + class_weights=class_weights_copyright, transformer_name=transformer) + + if fold_count == 1: + model.train(xtr, y_copyrights) + else: + model.train_nfold(xtr, y_copyrights) + # saving the model + model.save() + + # license classifier + xtr, y_licenses = _read_data('data/textClassification/licenses/copyrights-licenses-data-validated.csv', data_type="licenses") + model_name = 'license_'+architecture + class_weights_licenses = None + #batch_size, maxlen, patience, early_stop, max_epoch = configure(architecture) + + model = Classifier(model_name, architecture=architecture, list_classes=list_classes_licenses, max_epoch=max_epoch, fold_number=fold_count, patience=patience, + use_roc_auc=True, embeddings_name=embeddings_name, batch_size=batch_size, maxlen=maxlen, early_stop=early_stop, + class_weights=class_weights_licenses, transformer_name=transformer) + + if fold_count == 1: + model.train(xtr, y_licenses) + else: + model.train_nfold(xtr, y_licenses) + # saving the model + model.save() + + +def train_and_eval(embeddings_name, fold_count, architecture="gru", transformer=None): + print('loading multiclass copyright/license dataset...') + xtr, y_copyrights = _read_data('data/textClassification/licenses/copyrights-licenses-data-validated.csv', data_type="copyrights") + + report_training_copyrights(y_copyrights) + + # copyright ownwer classifier + model_name = 'copyright_'+architecture + + # segment train and eval sets + x_train, y_train, x_test, y_test = split_data_and_labels(xtr, y_copyrights, 0.9) + batch_size, maxlen, patience, early_stop, max_epoch = configure(architecture) + + print(list_classes_copyright) + + model = Classifier(model_name, architecture=architecture, list_classes=list_classes_copyright, max_epoch=max_epoch, fold_number=fold_count, patience=patience, + use_roc_auc=True, embeddings_name=embeddings_name, batch_size=batch_size, maxlen=maxlen, early_stop=early_stop, + class_weights=class_weights_copyright, transformer_name=transformer) + + if fold_count == 1: + model.train(x_train, y_train) + else: + model.train_nfold(x_train, y_train) + model.eval(x_test, y_test) + + # saving the model + model.save() + + # license classifier + xtr, y_licenses = _read_data('data/textClassification/licenses/copyrights-licenses-data-validated.csv', data_type="licenses") + + model_name = 'license_'+architecture + + # segment train and eval sets + x_train, y_train, x_test, y_test = split_data_and_labels(xtr, y_licenses, 0.9) + #batch_size, maxlen, patience, early_stop, max_epoch = configure(architecture) + class_weights_licenses = None + + model = Classifier(model_name, architecture=architecture, list_classes=list_classes_licenses, max_epoch=max_epoch, fold_number=fold_count, patience=patience, + use_roc_auc=True, embeddings_name=embeddings_name, batch_size=batch_size, maxlen=maxlen, early_stop=early_stop, + class_weights=class_weights_licenses, transformer_name=transformer) + + if fold_count == 1: + model.train(x_train, y_train) + else: + model.train_nfold(x_train, y_train) + model.eval(x_test, y_test) + + # saving the model (not so useful...) + model.save() + + +def train_binary(embeddings_name, fold_count, architecture="gru", transformer=None): + print('loading multiclass copyright/license dataset...') + xtr, y_copyrights = _read_data('data/textClassification/licenses/copyrights-licenses-data-validated.csv', data_type="copyrights") + + report_training_contexts(y_copyrights) + + for class_rank in range(len(list_classes_copyright)): + model_name = 'copyright_' + list_classes_copyright[class_rank] + '_'+architecture + + # we could experiment with binary weighting the class maybe + class_weights = None + + batch_size, maxlen, patience, early_stop, max_epoch = configure(architecture) + + y_train_class_rank = [ [1, 0] if y[class_rank] == 1.0 else [0, 1] for y in y_copyrights ] + y_train_class_rank = np.array(y_train_class_rank) + + list_classes_rank = [list_classes_copyright[class_rank], "not_"+list_classes_copyright[class_rank]] + + model = Classifier(model_name, architecture=architecture, list_classes=list_classes_rank, max_epoch=max_epoch, fold_number=fold_count, patience=patience, + use_roc_auc=True, embeddings_name=embeddings_name, batch_size=batch_size, maxlen=maxlen, early_stop=early_stop, + class_weights=class_weights, transformer_name=transformer) + + if fold_count == 1: + model.train(x_train, y_train_class_rank) + else: + model.train_nfold(x_train, y_train_class_rank) + # saving the model + model.save() + + xtr, y_licenses = _read_data('data/textClassification/licenses/copyrights-licenses-data-validated.csv', data_type="licenses") + for class_rank in range(len(list_classes_licenses)): + model_name = 'licenses_' + list_classes_licenses[class_rank] + '_'+architecture + + # we could experiment with binary weighting the class maybe + class_weights = None + + batch_size, maxlen, patience, early_stop, max_epoch = configure(architecture) + + y_train_class_rank = [ [1, 0] if y[class_rank] == 1.0 else [0, 1] for y in y_licenses ] + y_train_class_rank = np.array(y_train_class_rank) + + list_classes_rank = [list_classes_licenses[class_rank], "not_"+list_classes_licenses[class_rank]] + + model = Classifier(model_name, architecture=architecture, list_classes=list_classes_rank, max_epoch=max_epoch, fold_number=fold_count, patience=patience, + use_roc_auc=True, embeddings_name=embeddings_name, batch_size=batch_size, maxlen=maxlen, early_stop=early_stop, + class_weights=class_weights, transformer_name=transformer) + + if fold_count == 1: + model.train(x_train, y_train_class_rank) + else: + model.train_nfold(x_train, y_train_class_rank) + # saving the model + model.save() + + +def train_and_eval_binary(embeddings_name, fold_count, architecture="gru", transformer=None): + print('loading multiclass copyright/license dataset...') + xtr, y_copyrights = _read_data('data/textClassification/licenses/copyrights-licenses-data-validated.csv', data_type="copyrights") + + report_training_contexts(y_copyrights) + + # segment train and eval sets + x_train, y_train, x_test, y_test = split_data_and_labels(xtr, y_copyrights, 0.9) + + for class_rank in range(len(list_classes_copyright)): + model_name = 'copyright_' + list_classes_copyright[class_rank] + '_'+architecture + class_weights = None + + batch_size, maxlen, patience, early_stop, max_epoch = configure(architecture) + + y_train_class_rank = [ [1, 0] if y[class_rank] == 1.0 else [0, 1] for y in y_train ] + y_test_class_rank = [ [1, 0] if y[class_rank] == 1.0 else [0, 1] for y in y_test ] + + y_train_class_rank = np.array(y_train_class_rank) + y_test_class_rank = np.array(y_test_class_rank) + + list_classes_rank = [list_classes[class_rank], "not_"+list_classes[class_rank]] + + model = Classifier(model_name, architecture=architecture, list_classes=list_classes_rank, max_epoch=max_epoch, fold_number=fold_count, patience=patience, + use_roc_auc=True, embeddings_name=embeddings_name, batch_size=batch_size, maxlen=maxlen, early_stop=early_stop, + class_weights=class_weights, transformer_name=transformer) + + if fold_count == 1: + model.train(x_train, y_train_class_rank) + else: + model.train_nfold(x_train, y_train_class_rank) + model.eval(x_test, y_test_class_rank) + + # saving the model + #model.save() + + xtr, y_licenses = _read_data('data/textClassification/licenses/copyrights-licenses-data-validated.csv', data_type="licenses") + + # segment train and eval sets + x_train, y_train, x_test, y_test = split_data_and_labels(xtr, y_licenses, 0.9) + + for class_rank in range(len(list_classes_licenses)): + model_name = 'licenses_' + list_classes_licenses[class_rank] + '_'+architecture + class_weights = None + + batch_size, maxlen, patience, early_stop, max_epoch = configure(architecture) + + y_train_class_rank = [ [1, 0] if y[class_rank] == 1.0 else [0, 1] for y in y_train ] + y_test_class_rank = [ [1, 0] if y[class_rank] == 1.0 else [0, 1] for y in y_test ] + + y_train_class_rank = np.array(y_train_class_rank) + y_test_class_rank = np.array(y_test_class_rank) + + list_classes_rank = [list_classes[class_rank], "not_"+list_classes[class_rank]] + + model = Classifier(model_name, architecture=architecture, list_classes=list_classes_rank, max_epoch=max_epoch, fold_number=fold_count, patience=patience, + use_roc_auc=True, embeddings_name=embeddings_name, batch_size=batch_size, maxlen=maxlen, early_stop=early_stop, + class_weights=class_weights, transformer_name=transformer) + + if fold_count == 1: + model.train(x_train, y_train_class_rank) + else: + model.train_nfold(x_train, y_train_class_rank) + model.eval(x_test, y_test_class_rank) + + # saving the model + #model.save() + + +# classify a list of texts +def classify(texts, output_format, embeddings_name=None, architecture="gru", transformer=None): + # load model + model = Classifier('copyright_'+architecture) + model.load() + start_time = time.time() + result = model.predict(texts, output_format) + runtime = round(time.time() - start_time, 3) + + model = Classifier('license_'+architecture) + model.load() + result2 = model.predict(texts, output_format) + #result[] = result2[] + runtime = round(time.time() - start_time, 3) + if output_format == 'json': + result["runtime"] = runtime + else: + print("runtime: %s seconds " % (runtime)) + + return result + + +def _read_data(file_path, data_type="copyrights"): + ''' + Classification training data is expected in the following input format (csv or tsv): + text_0 copyright_owner_0 license_0 + text_1 copyright_owner_1 license_1 + ... + text_n copyright_owner_n license_n + + One of the value copyright_owner_i or license_i can be empty, in this case the training + case is only relevant to one classifier. + + data_type indicates the data to retun according to the classifier, it is either + "copyrights" or "licences". + + Note: final classification data include vectorized class values and the whole set is shuffled. + ''' + x, y = load_texts_and_classes_pandas_no_id('data/textClassification/licenses/copyrights-licenses-data-validated.csv') + y_target = None + list_classes = None + if data_type == "copyrights": + y_target = y[:, 0] + list_classes = list_classes_copyright + elif data_type == "licenses": + y_target = y[:, 1] + list_classes = list_classes_licenses + else: + print("invalid data type:", data_type) + return None, None + + # remove rows when class valus is MISSINGVALUE + def delete_rows(vecA, vecB, value): + new_vecA = [] + new_vecB = [] + for i in range(len(vecB)): + if vecB[i] != value and vecB[i] != 'nan': + new_vecA.append(vecA[i]) + new_vecB.append(vecB[i]) + return np.asarray(new_vecA), np.asarray(new_vecB) + + x, y_target = delete_rows(x, y_target, 'MISSINGVALUE') + + xtr, y_target, _ = shuffle_triple_with_view(x, y_target) + + y_target_final = [] + for i in range(len(y_target)): + index = list_classes.index(y_target[i]) + y_target_final.append(vectorizer(index, len(list_classes))) + + return xtr, np.array(y_target_final) + + +def report_training_copyrights(y): + ''' + Quick and dirty stats on the classes for copyrights owner + ''' + nb_publisher = 0 + nb_authors = 0 + nb_undecidable = 0 + for the_class in y: + if the_class[0] == 1: + nb_publisher += 1 + elif the_class[1] == 1: + nb_authors += 1 + elif the_class[2] == 1: + nb_undecidable += 1 + + print("\ntotal context training cases:", len(y)) + + print("\t- publisher owner:", nb_publisher) + print("\t not publisher owner:", str(len(y) - nb_publisher)) + + print("\t- authors owner:", nb_authors) + print("\t not authors owner:", str(len(y) - nb_authors)) + + print("\t- undecidable:", nb_undecidable) + print("\t not undecidable:", str(len(y) - nb_undecidable)) + + +if __name__ == "__main__": + parser = argparse.ArgumentParser( + description = "Classify a copyright/license section using the DeLFT library") + + word_embeddings_examples = ['glove-840B', 'fasttext-crawl', 'word2vec'] + pretrained_transformers_examples = [ 'bert-base-cased', 'bert-large-cased', 'allenai/scibert_scivocab_cased' ] + + parser.add_argument("action") + parser.add_argument("--fold-count", type=int, default=1) + parser.add_argument("--architecture",default='gru', help="type of model architecture to be used, one of "+str(architectures)) + parser.add_argument( + "--embedding", + default=None, + help="The desired pre-trained word embeddings using their descriptions in the file. " + \ + "For local loading, use delft/resources-registry.json. " + \ + "Be sure to use here the same name as in the registry, e.g. " + str(word_embeddings_examples) + \ + " and that the path in the registry to the embedding file is correct on your system." + ) + parser.add_argument( + "--transformer", + default=None, + help="The desired pre-trained transformer to be used in the selected architecture. " + \ + "For local loading use, delft/resources-registry.json, and be sure to use here the same name as in the registry, e.g. " + \ + str(pretrained_transformers_examples) + \ + " and that the path in the registry to the model path is correct on your system. " + \ + "HuggingFace transformers hub will be used otherwise to fetch the model, see https://huggingface.co/models " + \ + "for model names" + ) + + args = parser.parse_args() + + if args.action not in ('train', 'train_eval', 'classify', 'train_binary', 'train_eval_binary'): + print('action not specified, must be one of [train,train_binary,train_eval,train_eval_binary,classify]') + + embeddings_name = args.embedding + transformer = args.transformer + + architecture = args.architecture + if architecture not in architectures: + print('unknown model architecture, must be one of '+str(architectures)) + + if transformer == None and embeddings_name == None: + # default word embeddings + embeddings_name = "glove-840B" + + if args.action == 'train': + if args.fold_count < 1: + raise ValueError("fold-count should be equal or more than 1") + + train(embeddings_name, args.fold_count, architecture=architecture, transformer=transformer) + + if args.action == 'train_binary': + if args.fold_count < 1: + raise ValueError("fold-count should be equal or more than 1") + + train_binary(embeddings_name, args.fold_count, architecture=architecture, transformer=transformer) + + if args.action == 'train_eval': + if args.fold_count < 1: + raise ValueError("fold-count should be equal or more than 1") + + y_test = train_and_eval(embeddings_name, args.fold_count, architecture=architecture, transformer=transformer) + + if args.action == 'train_eval_binary': + if args.fold_count < 1: + raise ValueError("fold-count should be equal or more than 1") + + y_test = train_and_eval_binary(embeddings_name, args.fold_count, architecture=architecture, transformer=transformer) + + if args.action == 'classify': + someTexts = ['', + '', + ''] + result = classify(someTexts, "json", architecture=architecture, embeddings_name=embeddings_name, transformer=transformer) + print(json.dumps(result, sort_keys=False, indent=4, ensure_ascii=False)) + diff --git a/delft/sequenceLabelling/trainer.py b/delft/sequenceLabelling/trainer.py index e1e83ca2..6c44455a 100644 --- a/delft/sequenceLabelling/trainer.py +++ b/delft/sequenceLabelling/trainer.py @@ -278,6 +278,7 @@ def on_epoch_end(self, epoch, logs): if self.model is not None: logs.update({"lr": self.model.optimizer._decayed_lr(tf.float32)}) + def get_callbacks(log_dir=None, valid=(), early_stopping=True, patience=5, use_crf=True, use_chain_crf=False, model=None): """ Get callbacks. diff --git a/delft/textClassification/models.py b/delft/textClassification/models.py index 09be91f8..08ddbe47 100644 --- a/delft/textClassification/models.py +++ b/delft/textClassification/models.py @@ -151,7 +151,7 @@ def train_model(self, use_multiprocessing=multiprocessing, workers=nb_workers, class_weight=class_weights, - epochs=max_epoch, callbacks=callbacks) + epochs=1, callbacks=callbacks) y_pred = self.model.predict( validation_generator, diff --git a/delft/textClassification/reader.py b/delft/textClassification/reader.py index 46b1621e..30b2d903 100644 --- a/delft/textClassification/reader.py +++ b/delft/textClassification/reader.py @@ -41,7 +41,7 @@ def load_texts_and_classes(filepath): def load_texts_and_classes_pandas(filepath): """ - Load texts and classes from a file in csv format using pandas dataframe: + Load texts and classes from a file in csv format using pandas dataframe, with format as follow: id text class_0 ... class_n id_0 text_0 class_00 ... class_n0 @@ -69,6 +69,36 @@ def load_texts_and_classes_pandas(filepath): return np.asarray(texts_list), np.asarray(classes_list) +def load_texts_and_classes_pandas_no_id(filepath): + """ + Load texts and classes from a file in csv format using pandas dataframe, with format as follow: + + text class_0 ... class_n + text_0 class_00 ... class_n0 + text_1 class_01 ... class_n1 + ... + text_m class_0m ... class_nm + + It should support any CSV file format. + + Returns: + tuple(numpy array, numpy array): texts and classes + + """ + + df = pd.read_csv(filepath) + df.iloc[:,1].fillna('MISSINGVALUE', inplace=True) + + texts_list = [] + for j in range(0, df.shape[0]): + texts_list.append(df.iloc[j,0]) + + classes = df.iloc[:,1:] + classes_list = classes.values.tolist() + + return np.asarray(texts_list), np.asarray(classes_list) + + def load_texts_pandas(filepath): """ Load texts from a file in csv format using pandas dataframe: diff --git a/delft/textClassification/wrapper.py b/delft/textClassification/wrapper.py index abcce915..cc8127ed 100644 --- a/delft/textClassification/wrapper.py +++ b/delft/textClassification/wrapper.py @@ -91,7 +91,6 @@ def __init__(self, else: learning_rate = 2e-5 - self.model = None self.models = None self.log_dir = log_dir diff --git a/doc/Install-DeLFT.md b/doc/Install-DeLFT.md index 9ed49e91..c82e7b7e 100644 --- a/doc/Install-DeLFT.md +++ b/doc/Install-DeLFT.md @@ -16,16 +16,16 @@ source env/bin/activate Install the dependencies: ```sh -pip3 install -r requirements.txt +python3 -m pip install -r requirements.txt ``` Finally install the project in editable state ```sh -pip3 install -e . +python3 -m pip install -e . ``` -Current DeLFT version is __0.3.3__, which has been tested successfully with Python 3.8 and tensorflow 2.9.3. IT will exploit your available GPU with the condition that CUDA (>=11.2) is properly installed. +Current DeLFT version is __0.3.4__, which has been tested successfully with Python 3.8 and tensorflow 2.9.3. It will exploit your available GPU with the condition that CUDA (>=12) is properly installed. To ensure the availability of GPU devices for the right version of tensorflow, CUDA, CuDNN and python, you can check the dependencies [here](https://www.tensorflow.org/install/source#gpu). diff --git a/doc/Introduction.md b/doc/Introduction.md index 934b23ec..8077ca06 100644 --- a/doc/Introduction.md +++ b/doc/Introduction.md @@ -36,4 +36,4 @@ Some contributions include: A native Java integration of the library has been realized in [GROBID](https://github.com/kermitt2/grobid) via [JEP](https://github.com/ninia/jep). -The latest DeLFT release has been tested with python 3.8 and Tensorflow 2.9.3. As always, GPU(s) are required for decent training time. A GeForce GTX 1050 Ti (4GB) for instance is fine for running RNN models and BERT or RoBERTa base models. Using BERT large model is possible from a GeForce GTX 1080 Ti (11GB) with modest batch size. +The latest DeLFT release __0.3.4__ has been tested successfully with python 3.8 and Tensorflow 2.9.3. As always, GPU(s) are required for decent training time. For example, a GeForce GTX 1050 Ti (4GB) is working very well for running RNN models and BERT or RoBERTa base models. Using BERT large model is no problem with a GeForce GTX 1080 Ti (11GB), including training with modest batch size. Using multiple GPUs (training and inference) is supported. \ No newline at end of file diff --git a/doc/copyrights_licenses_eval.txt b/doc/copyrights_licenses_eval.txt new file mode 100644 index 00000000..206b2bb2 --- /dev/null +++ b/doc/copyrights_licenses_eval.txt @@ -0,0 +1,115 @@ +GRU - glove-840B +================ + +* ensemble 10 classifiers (10 folds) * + +Evaluation on 73 instances: + precision recall f-score support + publisher 0.9062 0.9355 0.9206 31 + authors 1.0000 0.8966 0.9455 29 + undecided 0.7333 0.8462 0.7857 13 + +Evaluation on 61 instances: + precision recall f-score support + CC-0 0.0000 0.0000 0.0000 0 + CC-BY 0.9565 1.0000 0.9778 22 + CC-BY-NC 0.0000 0.0000 0.0000 1 + CC-BY-NC-ND 1.0000 1.0000 1.0000 3 + CC-BY-SA 1.0000 1.0000 1.0000 1 + CC-BY-NC-SA 0.0000 0.0000 0.0000 0 + CC-BY-ND 0.0000 0.0000 0.0000 0 + copyright 1.0000 1.0000 1.0000 8 + other 0.0000 0.0000 0.0000 0 + undecided 1.0000 1.0000 1.0000 26 + +* single classifier + +Evaluation on 73 instances: + precision recall f-score support + publisher 0.9032 0.9032 0.9032 31 + authors 0.8387 0.8966 0.8667 29 + undecided 0.8182 0.6923 0.7500 13 + +Evaluation on 72 instances: + precision recall f-score support + CC-0 0.0000 0.0000 0.0000 0 + CC-BY 0.8788 0.9667 0.9206 30 + CC-BY-NC 0.0000 0.0000 0.0000 4 + CC-BY-NC-ND 1.0000 1.0000 1.0000 3 + CC-BY-SA 1.0000 1.0000 1.0000 3 + CC-BY-NC-SA 0.0000 0.0000 0.0000 0 + CC-BY-ND 0.0000 0.0000 0.0000 0 + copyright 0.9167 1.0000 0.9565 11 + other 0.0000 0.0000 0.0000 0 + undecided 0.9524 0.9524 0.9524 21 + + +SciBERT +======= + +Evaluation on 73 instances: + precision recall f-score support + publisher 0.9394 1.0000 0.9688 31 + authors 1.0000 0.9655 0.9825 29 + undecided 1.0000 0.9231 0.9600 13 + + +Evaluation on 70 instances: + precision recall f-score support + CC-0 0.0000 0.0000 0.0000 0 + CC-BY 0.7568 0.9655 0.8485 29 + CC-BY-NC 0.0000 0.0000 0.0000 4 + CC-BY-NC-ND 0.0000 0.0000 0.0000 2 + CC-BY-SA 0.0000 0.0000 0.0000 2 + CC-BY-NC-SA 0.0000 0.0000 0.0000 0 + CC-BY-ND 0.0000 0.0000 0.0000 0 + copyright 0.8462 0.9167 0.8800 12 + other 0.0000 0.0000 0.0000 0 + undecided 0.9500 0.9048 0.9268 21 + +BERT-base +========= + +Evaluation on 73 instances: + precision recall f-score support + publisher 0.9000 0.8710 0.8852 31 + authors 0.8750 0.9655 0.9180 29 + undecided 0.9091 0.7692 0.8333 13 + +Evaluation on 70 instances: + precision recall f-score support + CC-0 0.0000 0.0000 0.0000 0 + CC-BY 0.7632 1.0000 0.8657 29 + CC-BY-NC 0.0000 0.0000 0.0000 4 + CC-BY-NC-ND 0.0000 0.0000 0.0000 2 + CC-BY-SA 1.0000 0.5000 0.6667 2 + CC-BY-NC-SA 0.0000 0.0000 0.0000 0 + CC-BY-ND 0.0000 0.0000 0.0000 0 + copyright 1.0000 0.7500 0.8571 12 + other 0.0000 0.0000 0.0000 0 + undecided 0.9545 1.0000 0.9767 21 + + +BioLinkBERT-base +================ + +Evaluation on 73 instances: + precision recall f-score support + publisher 0.8788 0.9355 0.9062 31 + authors 0.9655 0.9655 0.9655 29 + undecided 0.8182 0.6923 0.7500 13 + +valuation on 70 instances: + precision recall f-score support + CC-0 0.0000 0.0000 0.0000 0 + CC-BY 0.7059 0.8276 0.7619 29 + CC-BY-NC 0.0000 0.0000 0.0000 4 + CC-BY-NC-ND 0.0000 0.0000 0.0000 2 + CC-BY-SA 0.0000 0.0000 0.0000 2 + CC-BY-NC-SA 0.0000 0.0000 0.0000 0 + CC-BY-ND 0.0000 0.0000 0.0000 0 + copyright 0.8000 0.6667 0.7273 12 + other 0.0000 0.0000 0.0000 0 + undecided 0.6923 0.8571 0.7660 21 + +