From 89c5f51962a209428ae72a0493f1924212853020 Mon Sep 17 00:00:00 2001 From: kedhammar Date: Wed, 25 Sep 2024 14:17:54 +0200 Subject: [PATCH] alphabetize --- scripts/comments_to_running_notes.py | 42 ++++++++++++++-------------- 1 file changed, 21 insertions(+), 21 deletions(-) diff --git a/scripts/comments_to_running_notes.py b/scripts/comments_to_running_notes.py index ef92ed5e..31c0bc59 100644 --- a/scripts/comments_to_running_notes.py +++ b/scripts/comments_to_running_notes.py @@ -14,15 +14,15 @@ def categorization(process_name): decision = { - "10X Chromium Generic: Pre-GEM Processing": "Workset", - "10X Chromium Generic: GEM Generation": "Workset", - "10X Chromium Generic: GEM Cleanup": "Workset", "10X Chromium Generic: cDNA QC": "Workset", "10X Chromium Generic: Finish GEM Processing": "Workset", - "10X Chromium Generic: Pre-Library Processing": "Workset", + "10X Chromium Generic: Finish Library Processing": "Workset", + "10X Chromium Generic: GEM Cleanup": "Workset", + "10X Chromium Generic: GEM Generation": "Workset", "10X Chromium Generic: Library Construction": "Workset", "10X Chromium Generic: Library Purification": "Workset", - "10X Chromium Generic: Finish Library Processing": "Workset", + "10X Chromium Generic: Pre-GEM Processing": "Workset", + "10X Chromium Generic: Pre-Library Processing": "Workset", "Adapter ligation and reverse transcription": "Workset", "Aggregate QC (DNA) 4.0": "Workset", "Aggregate QC (Library Validation) 4.0": "Workset", @@ -33,9 +33,9 @@ def categorization(process_name): "Aliquot Samples for Qubit/Bioanalyzer": "Workset", "Amplification and Purification": "Workset", "Amplify Adapter-Ligated Library (SS XT) 4.0": "", - "Amplify Captured Libraries to Add Index Tags (SS XT) 4.0": "", - "Amplify by PCR and Add Index Tags": "Workset", "Amplify by PCR and Add Index Tags (TruSeq small RNA) 1.0": "Workset", + "Amplify by PCR and Add Index Tags": "Workset", + "Amplify Captured Libraries to Add Index Tags (SS XT) 4.0": "", "AMPure Size Selection": "Workset", "Applications Generic Process": "Workset", "Applications Indexing": "Workset", @@ -47,11 +47,11 @@ def categorization(process_name): "Bioanalyzer QC (DNA) 4.0": "Workset", "Bioanalyzer QC (Library Validation) 4.0": "Workset", "Bioanalyzer QC (RNA) 4.0": "Workset", - "cDNA QC": "", "CA Purification": "Workset", "CaliperGX QC (DNA)": "", "CaliperGX QC (RNA)": "", "Capture And Wash (SS XT) 4.0": "Workset", + "cDNA QC": "", "Chromatin capture, digestion, end ligation and crosslink reversal (HiC) 1.0": "", "Circularization": "Workset", "Cluster Generation (HiSeq X) 1.0": "Flowcell", @@ -59,8 +59,8 @@ def categorization(process_name): "Crosslinking & Digestion": "", "Customer Gel QC": "Workset", "Denature, Dilute and Load Sample (MiSeq) 4.0": "Flowcell", - "End Repair, A-Tailing and Adapter Ligation (SS XT) 4.0": "Workset", "End repair, A-tailing and adapter ligation (Nextera) 4.0": "Workset", + "End Repair, A-Tailing and Adapter Ligation (SS XT) 4.0": "Workset", "End repair, A-tailing and adapter ligation (TruSeq RNA) 4.0": "Workset", "End repair, adapter ligation, ligation capture and Index PCR (HiC)": "", "End repair, size selection, A-tailing and adapter ligation (TruSeq PCR-free DNA) 4.0": "Workset", @@ -73,23 +73,23 @@ def categorization(process_name): "Fragmentation & cDNA synthesis (TruSeq RNA) 4.0": "Workset", "g-Tube Fragmentation": "Workset", "Generic QC": "", - "HT-End repair, A-tailing and adapter ligation (TruSeq RNA) 4.0": "Workset", "HiC Intermediate QC": "", + "HT-End repair, A-tailing and adapter ligation (TruSeq RNA) 4.0": "Workset", "Hybridize Library (SS XT) 4.0": "", - "Illumina DNA PCR-free Library Construction": "Workset", "Illumina DNA No-QC Library Construction": "Workset", "Illumina DNA No-QC Library Pooling": "Workset", + "Illumina DNA PCR-free Library Construction": "Workset", "Illumina Sequencing (HiSeq X) 1.0": "Flowcell", "Illumina Sequencing (Illumina SBS) 4.0": "Flowcell", "Illumina Sequencing (NextSeq) v1.0": "Flowcell", "Intermediate QC": "", - "Library Normalization": "", "Library Normalization (AVITI) v1.0": "", "Library Normalization (Illumina SBS) 4.0": "", "Library Normalization (MiSeq) 4.0": "", "Library Normalization (NextSeq) v1.0": "", "Library Normalization (NovaSeq) v2.0": "", "Library Normalization (NovaSeqXPlus) v1.0": "", + "Library Normalization": "", "Library Pooling (Finished Libraries) 4.0": "", "Library Pooling (Illumina SBS) 4.0": "", "Library Pooling (MiSeq) 4.0": "", @@ -100,18 +100,16 @@ def categorization(process_name): "Ligate 5' adapters (TruSeq small RNA) 1.0": "Workset", "Linear DNA digestion, Circularized DNA shearing and Streptavidin Bead Binding": "Workset", "Load to Flowcell (NextSeq v1.0)": "", - "mRNA Purification, Fragmentation & cDNA synthesis (TruSeq RNA) 4.0": "Workset", "MinElute Purification": "", "MinION QC": "Workset", "MiSeq Run (MiSeq) 4.0": "Flowcell", + "mRNA Purification, Fragmentation & cDNA synthesis (TruSeq RNA) 4.0": "Workset", "NeoPrep Library QC v1.0": "Workset", "ONT Adapter ligation v2.0": "Workset", "ONT Barcoding": "Workset", "ONT End-Prep v2.0": "Workset", "ONT Finish Sequencing v2.1": "Flowcell", "ONT Pooling v2.0": "Workset", - "ONT Sequencing and Reloading v3.1": "Flowcell", - "ONT Start Sequencing v3.0": "Flowcell", "ONT QC Adapter Ligation v1.2": "", "ONT QC Analysis": "", "ONT QC Barcoding v1.2": "", @@ -119,25 +117,27 @@ def categorization(process_name): "ONT QC Pooling v1.2": "", "ONT QC Setup Workset/Plate": "", "ONT QC Start Sequencing": "Flowcell", - "Pre-Pooling": "", + "ONT Sequencing and Reloading v3.1": "Flowcell", + "ONT Start Sequencing v3.0": "Flowcell", "Pre-Pooling (AVITI) v1.0": "", "Pre-Pooling (Illumina SBS) 4.0": "", "Pre-Pooling (MiSeq) 4.0": "", "Pre-Pooling (NextSeq) v1.0": "", "Pre-Pooling (NovaSeq) v2.0": "", "Pre-Pooling (NovaSeqXPlus) v1.0": "", + "Pre-Pooling": "", "Project Summary 1.3": "", "PromethION Sequencing": "", "Proximity Ligation": "", - "Purification": "Workset", "Purification (ThruPlex)": "Workset", + "Purification": "Workset", "qPCR QC (Dilution Validation) 4.0": "", "qPCR QC (Library Validation) 4.0": "", "Quant-iT QC (DNA) 4.0": "Workset", "Quant-iT QC (Library Validation) 4.0": "Workset", "Quant-iT QC (RNA) 4.0": "Workset", - "Qubit QC (DNA) 4.0": "Workset", "Qubit QC (Dilution Validation) 4.0": "Workset", + "Qubit QC (DNA) 4.0": "Workset", "Qubit QC (Library Validation) 4.0": "Workset", "Qubit QC (RNA) 4.0": "Workset", "RAD-seq Library Indexing v1.0": "", @@ -160,14 +160,14 @@ def categorization(process_name): "Sort NextSeq Samples (NextSeq) v1.0": "", "Sort NovaSeq Samples (NovaSeq) v2.0": "", "Sort NovaSeqXPlus Samples (NovaSeqXPlus) v1.0": "", - "Sort Samples for Norm/Pooling": "", "Sort Samples (ONT Pre-Prep)": "Workset", "Sort Samples (ONT Seq)": "Workset", + "Sort Samples for Norm/Pooling": "", "Tagmentation, Strand displacement and AMPure purification": "Workset", - "Tissue Extraction": "", - "Tissue QC": "", "ThruPlex library amplification": "Workset", "ThruPlex template preparation and synthesis": "Workset", + "Tissue Extraction": "", + "Tissue QC": "", "Volume Measurement QC": "Workset", }