From 2c2d3ac6d748ad20cc455db6d1d18a0159b6e384 Mon Sep 17 00:00:00 2001
From: Jason Wohlgemuth <jhwohlgemuth@gmail.com>
Date: Sat, 30 Nov 2024 14:44:54 -0500
Subject: [PATCH] feat: Remove conda manifest files and install script

---
 provision/New-CondaEnvironment.ps1   | 89 ----------------------------
 provision/conda/environment.base.yml | 39 ------------
 provision/conda/environment.cml.yml  | 42 -------------
 provision/conda/environment.gis.yml  | 17 ------
 provision/conda/environment.nlp.yml  | 26 --------
 provision/conda/environment.qml.yml  | 20 -------
 provision/conda/environment.viz.yml  | 22 -------
 provision/conda/environment.xai.yml  | 23 -------
 8 files changed, 278 deletions(-)
 delete mode 100644 provision/New-CondaEnvironment.ps1
 delete mode 100644 provision/conda/environment.base.yml
 delete mode 100644 provision/conda/environment.cml.yml
 delete mode 100644 provision/conda/environment.gis.yml
 delete mode 100644 provision/conda/environment.nlp.yml
 delete mode 100644 provision/conda/environment.qml.yml
 delete mode 100644 provision/conda/environment.viz.yml
 delete mode 100644 provision/conda/environment.xai.yml

diff --git a/provision/New-CondaEnvironment.ps1 b/provision/New-CondaEnvironment.ps1
deleted file mode 100644
index a6f4952..0000000
--- a/provision/New-CondaEnvironment.ps1
+++ /dev/null
@@ -1,89 +0,0 @@
-#!/usr/bin/env pwsh
-#Requires -Modules Prelude
-
-[CmdletBinding(SupportsShouldProcess = $True)]
-Param(
-    [Parameter(Mandatory = $False, Position = 0)]
-    [ValidateSet(
-        'base',
-        'cml',
-        'gis',
-        'nlp',
-        'qml',
-        'viz',
-        'xai'
-    )]
-    [String[]] $Categories = 'base',
-    [Parameter(Mandatory = $False, Position = 1, ValueFromPipeline = $True)]
-    [String] $Name = 'default',
-    [Parameter(Mandatory = $False, Position = 2)]
-    [String] $Output = 'environment.yml',
-    [String[]] $Exclude = @(),
-    [String] $Container,
-    [String] $ManifestParent = './conda',
-    [Switch] $Update,
-    [Switch] $NoInstall,
-    [Switch] $Persist,
-    [Switch] $Force
-)
-Begin {
-    if (-not (Test-Command conda-merge)) {
-        "==> [ERROR] Command 'conda-merge' not found" | Write-Color -Red
-        exit
-    }
-    if (-not (Test-Command mamba)) {
-        "==> [ERROR] Command 'mamba' not found" | Write-Color -Red
-        exit
-    }
-    $Files = $Categories | ForEach-Object {
-        Join-Path $PSScriptRoot "${ManifestParent}/environment.${_}.yml"
-    }
-    foreach ($File in $Files) {
-        if (Test-Path -Path $File) {
-            "==> [INFO] Environment file found: $($File | Resolve-Path)" | Write-Verbose
-        } else {
-            "==> [ERROR] Environment file not found: ${File}" | Write-Color -Red
-            if (-not $Force) {
-                exit
-            }
-        }
-    }
-}
-End {
-    $Arguments = ($Files | ForEach-Object { "`"$($_ | Resolve-Path)`"" }) -join ' '
-    $Command = "conda-merge ${Arguments}"
-    $Content = if ($PSCmdlet.ShouldProcess("[EXECUTE] Update Conda environment ${Name}")) {
-        "==> [INFO] Executing: '${Command}'" | Write-Verbose
-        (Invoke-Expression $Command) -replace 'name:.*$', "name: ${Name}"
-    } else {
-        ''
-    }
-    foreach ($PackageRegex in $Exclude) {
-        $Content = $Content | Where-Object { $_ -notmatch  $PackageRegex }
-    }
-    $Content | Set-Content -Path $Output
-    if (-not $NoInstall) {
-        $InstallToContainer = ![String]::IsNullOrEmpty($Container)
-        $SubCommand = if ($Update) { 'env update' } else { 'env create' }
-        $Command = if ($InstallToContainer) {
-            $Mamba = '/opt/conda/bin/mamba' # '/root/miniconda3/bin/mamba'
-            "docker exec -it ${Container} /bin/zsh -c `"${Mamba} ${SubCommand} --file /root/${Output}`""
-        } else {
-            "mamba ${SubCommand} --prefix $Env:_CONDA_ROOT\envs\${Name} --file ${Output}"
-        }
-        if ($PSCmdlet.ShouldProcess("[EXECUTE] Install Conda environment")) {
-            if ($InstallToContainer) {
-                "==> [INFO] Copying ${Output} to ${Container} container" | Write-Verbose
-                Invoke-Expression "docker cp ${Output} ${Container}:/root"
-            }
-            "==> [INFO] Executing: '${Command}'" | Write-Verbose
-            Invoke-Expression $Command
-        }
-    }
-    if (-not $Persist) {
-        if ($PSCmdlet.ShouldProcess("[REMOVE] ${Output}")) {
-            Remove-Item $Output
-        }
-    }
-    $Content
-}
\ No newline at end of file
diff --git a/provision/conda/environment.base.yml b/provision/conda/environment.base.yml
deleted file mode 100644
index 958428c..0000000
--- a/provision/conda/environment.base.yml
+++ /dev/null
@@ -1,39 +0,0 @@
-name: base
-channels:
-  - conda-forge
-  - defaults
-dependencies:
-  - black
-  - bottleneck
-  - conda
-  - conda-merge
-  - conda-pack
-  - dask
-  - ibis-framework
-  - ipykernel
-  - ipywidgets
-  - mamba
-  - modin-all
-  - numba
-  - numpy
-  - pandas
-  - pip=22.2.2
-  - polars
-  - pyarrow
-  - pylint
-  - pytest
-  - pytest-cov
-  - python<3.11
-  - pyyaml
-  - ruff
-  - tqdm
-  - xarray
-  - zarr
-  - pip:
-      - apprise
-      - drawdata
-      - fugue[dask,duckdb,ibis,polars]
-      - gdown
-      - hypothesis
-      - ptpython
-      - weave
\ No newline at end of file
diff --git a/provision/conda/environment.cml.yml b/provision/conda/environment.cml.yml
deleted file mode 100644
index 39a5732..0000000
--- a/provision/conda/environment.cml.yml
+++ /dev/null
@@ -1,42 +0,0 @@
-name: cml
-channels:
-  - rapidsai
-  - pytorch
-  - conda-forge
-  - nvidia
-  - defaults
-dependencies:
-  - cudatoolkit=11.6.0
-  - cudf
-  - cuml
-  - dask
-  - dask-cuda
-  - dask-cudf
-  - gputil
-  - h5netcdf
-  - h5py
-  - kmodes
-  - netCDF4
-  - opencv
-  - openpyxl
-  - pygments
-  - pytorch
-  - pytorch-lightning
-  - scikit-image
-  - scikit-learn
-  - scipy
-  - torchaudio
-  - torchinfo
-  - torchvision
-  - pip:
-      - bentoml
-      - deepchecks[vision]
-      - great_expectations
-      - huggingface-hub
-      - ivy-core
-      - merlin-dataloader
-      - nebullvm
-      - safetensors
-      - segmentation-models
-      - torchviz
-      - truss
\ No newline at end of file
diff --git a/provision/conda/environment.gis.yml b/provision/conda/environment.gis.yml
deleted file mode 100644
index 680882f..0000000
--- a/provision/conda/environment.gis.yml
+++ /dev/null
@@ -1,17 +0,0 @@
-name: gis
-channels:
-  - conda-forge
-  - defaults
-dependencies:
-  - cartopy
-  - fiona
-  - folium
-  - gdal
-  - geojson
-  - geopandas
-  - geopolars
-  - keplergl
-  - rasterio
-  - rioxarray
-  - shapely
-  - xarray-spatial
\ No newline at end of file
diff --git a/provision/conda/environment.nlp.yml b/provision/conda/environment.nlp.yml
deleted file mode 100644
index 15ea48a..0000000
--- a/provision/conda/environment.nlp.yml
+++ /dev/null
@@ -1,26 +0,0 @@
-name: nlp
-channels:
-  - conda-forge
-  - defaults
-dependencies:
-  - gensim
-  - langchain
-  - pip
-  - poppler
-  - spacy
-  - spacy-model-en_core_web_sm
-  - spacy-model-en_core_web_trf
-  - textblob
-  - transformers
-  - pip:
-      - deepchecks[nlp]
-      - embedchain
-      - ludwig
-      - nltk
-      - pdf2image
-      - pillow
-      - polyglot
-      - pytesseract
-      - sentencepiece
-      - sentence-transformers
-      - unstructured[local-inference]
\ No newline at end of file
diff --git a/provision/conda/environment.qml.yml b/provision/conda/environment.qml.yml
deleted file mode 100644
index 5c21f34..0000000
--- a/provision/conda/environment.qml.yml
+++ /dev/null
@@ -1,20 +0,0 @@
-name: qml
-channels:
-  - conda-forge
-  - microsoft
-  - defaults
-dependencies:
-  - qsharp
-  - notebook
-  - pip
-  - pyquil
-  - qutip
-  - pip:
-      - cirq
-      - pennylane
-      - pennylane-lightning
-      - pennylane-sf
-      - pennylane-qiskit
-      - pennylane-cirq
-      - pyzx
-      - strawberryfields
\ No newline at end of file
diff --git a/provision/conda/environment.viz.yml b/provision/conda/environment.viz.yml
deleted file mode 100644
index 718343c..0000000
--- a/provision/conda/environment.viz.yml
+++ /dev/null
@@ -1,22 +0,0 @@
-name: viz
-channels:
-  - pyviz
-  - plotly
-  - conda-forge
-  - defaults
-dependencies:
-  - altair
-  - altair_saver
-  - datashader
-  - holoviews
-  - hvplot
-  - geoviews
-  - jupyter_bokeh
-  - lumen
-  - matplotlib
-  - matplotlib-inline
-  - networkx
-  - panel
-  - plotly
-  - seaborn
-  - vega_datasets
\ No newline at end of file
diff --git a/provision/conda/environment.xai.yml b/provision/conda/environment.xai.yml
deleted file mode 100644
index 04d264a..0000000
--- a/provision/conda/environment.xai.yml
+++ /dev/null
@@ -1,23 +0,0 @@
-name: xai
-channels:
-  - pytorch
-  - conda-forge
-  - defaults
-dependencies:
-  - captum
-  - dalex=1.5
-  - shap=0.41
-  - pip:
-      - onnx==1.12.0
-      - onnx-tf==1.10.0
-      - onnxruntime==1.12.1
-      - onnxruntime-gpu==1.12.1
-      - quantus==0.0.1
-      - scikit-explain==0.0.7
-      - tensorboard==2.9.1
-      - tensorboard-data-server==0.6.1
-      - tensorboard-plugin-wit==1.8.1
-      - tensorflow==2.9.1
-      - tensorflow-estimator==2.9.0
-      - tensorflow-probability==0.17.0
-      - tf2onnx==1.12.1
\ No newline at end of file