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<a class="navbar-brand" href="index.html">Jens Daniel Müller</a>
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<a href="research.html">Research foci</a>
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<h1 class="title toc-ignore">Publications</h1>
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<center>
<img src="img/banners/papers_website_pic_wide_bw.jpg"
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<div style="margin-bottom:50px;">
</div>
<p>Regularly updated publication lists are also hosted on:</p>
<p><a
href="https://scholar.google.de/citations?user=HUngozUAAAAJ&hl=de"
target="_blank">Google scholar</a> (includes citations)<br />
<a href="https://orcid.org/0000-0003-3137-0883"
target="_blank">ORCID</a></p>
<div style="margin-bottom:50px;">
</div>
<hr />
<div id="peer-reviewed-articles" class="section level2">
<h2>Peer-reviewed articles</h2>
<div id="section" class="section level3">
<h3>2024</h3>
<p>Müller, J. D. and Gruber, N. (2024). <strong>Progression of Ocean
Interior Acidification over the Industrial Era</strong> [submitted to
Science Advances], <a
href="https://doi.org/10.22541/essoar.170654370.07309198/v1"
class="uri">https://doi.org/10.22541/essoar.170654370.07309198/v1</a>.</p>
<p>Resplandy, L., Hogikyan, A., Müller, J. D., Najjar, R. G., et al
(2024). <strong>A Synthesis of Global Coastal Ocean Greenhouse Gas
Fluxes</strong>, Global Biogeochemical Cycles, 38, e2023GB007803, <a
href="https://doi.org/10.1029/2023GB007803"
class="uri">https://doi.org/10.1029/2023GB007803</a>.</p>
<p>Terhaar, J., Goris, N., Müller, J. D., DeVries, T., Gruber, N.,
Hauck, J., Pérez, F. F., and Séférian, R. (2024). <strong>Assessment of
Global Ocean Biogeochemistry Models for Ocean Carbon Sink Estimates in
RECCAP2 and Recommendations for Future Studies</strong>, [accepted for
publication in Journal of Advances in Modeling Earth Systems], <a
href="https://doi.org/10.22541/essoar.168394734.41886821/v1"
class="uri">https://doi.org/10.22541/essoar.168394734.41886821/v1</a>.</p>
<p>Lauvset, S. K., Lange, N., Tanhua, T., Bittig, H. C., Olsen, A.,
Kozyr, A., Álvarez, M., Azetsu-Scott, K., Brown, P. J., Carter, B. R.,
Cotrim da Cunha, L., Hoppema, M., Humphreys, M. P., Ishii, M., Jeansson,
E., Murata, A., Müller, J. D., Perez, F. F., Schirnick, C., Steinfeldt,
R., Suzuki, T., Ulfsbo, A., Velo, A., Woosley, R. J., and Key, R.
(2024). <strong>The annual update GLODAPv2.2023: the global interior
ocean biogeochemical data product</strong>, [under review at ESSD], <a
href="https://doi.org/10.5194/essd-2023-468"
class="uri">https://doi.org/10.5194/essd-2023-468</a>.</p>
</div>
<div id="section-1" class="section level3">
<h3>2023</h3>
<p>Müller, J. D., Gruber, N., Carter, B., Feely, R., Ishii, M., Lange,
N., Lauvset, S. K., Murata, A., Olsen, A., Pérez, F. F., Sabine, C.,
Tanhua, T., Wanninkhof, R., and Zhu, D. (2023). <strong>Decadal Trends
in the Oceanic Storage of Anthropogenic Carbon From 1994 to
2014</strong>, AGU Advances, 4, e2023AV000875, <a
href="https://doi.org/10.1029/2023AV000875"
class="uri">https://doi.org/10.1029/2023AV000875</a>.</p>
<p>DeVries, T., Yamamoto, K., Wanninkhof, R., Gruber, N., Hauck, J.,
Müller, J. D., et al. (2023). <strong>Magnitude, Trends, and Variability
of the Global Ocean Carbon Sink From 1985 to 2018</strong>, Global
Biogeochemical Cycles, 37, e2023GB007780, <a
href="https://doi.org/10.1029/2023GB007780"
class="uri">https://doi.org/10.1029/2023GB007780</a>.</p>
<p>Gruber, N., Bakker, D. C. E., DeVries, T., Gregor, L., Hauck, J.,
Landschützer, P., McKinley, G. A., and Müller, J. D. (2023).
T<strong>rends and variability in the ocean carbon sink</strong>, Nat
Rev Earth Environ, 1–16, <a
href="https://doi.org/10.1038/s43017-022-00381-x"
class="uri">https://doi.org/10.1038/s43017-022-00381-x</a>.</p>
<p>Yasunaka, S., Manizza, M., Terhaar, J., Olsen, A., Yamaguchi, R.,
Landschützer, P., Watanabe, E., Carroll, D., Adiwira, H., Müller, J. D.,
and Hauck, J. (2023). <strong>An Assessment of CO2 Uptake in the Arctic
Ocean From 1985 to 2018</strong>, Global Biogeochemical Cycles, 37,
e2023GB007806, <a href="https://doi.org/10.1029/2023GB007806"
class="uri">https://doi.org/10.1029/2023GB007806</a>.</p>
<p>Rodgers, K. B., Schwinger, J., Fassbender, A. J., Landschützer, P.,
Yamaguchi, R., Frenzel, H., Stein, K., Müller, J. D., Goris, N., Sharma,
S., Bushinsky, S., Chau, T.-T.-T., Gehlen, M., Gallego, M. A., Gloege,
L., Gregor, L., Gruber, N., Hauck, J., Iida, Y., Ishii, M., Keppler, L.,
Kim, J.-E., Schlunegger, S., Tjiputra, J., Toyama, K., Vaittinada Ayar,
P., and Velo, A. (2023). <strong>Seasonal Variability of the Surface
Ocean Carbon Cycle: A Synthesis</strong>, Global Biogeochemical Cycles,
37, e2023GB007798, <a href="https://doi.org/10.1029/2023GB007798"
class="uri">https://doi.org/10.1029/2023GB007798</a>.</p>
<p>Kappel, E., Costello, M., Galgani, L., Gordó-Vilaseca, C.,
Govindarajan, A., Kouhi, S., Lavin, C., McCartin, L., Müller, J. D.,
Pirenne, B., Tanhua, T., Zhao, Q., and Zhao, S. (2023).
<strong>Introduction to Frontiers in Ocean Observing</strong>, Oceanog,
<a href="https://doi.org/10.5670/oceanog.2023.s1.1"
class="uri">https://doi.org/10.5670/oceanog.2023.s1.1</a>.</p>
<p>Müller, J. D.: <strong>RECCAP2-ocean data collection</strong>,
[Dataset], <a href="https://doi.org/10.5281/zenodo.7990823"
class="uri">https://doi.org/10.5281/zenodo.7990823</a>, 2023.</p>
<p>Pérez, F. F., Perez, F. F., Becker, M., Goris, N., Gehlen, M.,
Lopez-Mozos, M., Tjiputra, J., Olsen, A., Müller, J. D., Huertas, I. E.,
Chau, T. T. T., Cainzos, V., Velo, A., Benard, G., Hauck, J., Gruber,
N., and Wanninkhof, R. (2023). <strong>An assessment of CO2 storage and
sea-air fluxes for the Atlantic Ocean and Mediterranean Sea between 1985
and 2018</strong>, [under review at GBC] <a
href="https://doi.org/10.22541/essoar.170256825.55098483/v2"
class="uri">https://doi.org/10.22541/essoar.170256825.55098483/v2</a>.</p>
</div>
<div id="section-2" class="section level3">
<h3>2022</h3>
<p>Dai, M., Su, J., Zhao, Y., Hofmann, E. E., Cao, Z., Cai, W.-J., et
al. (2022). <strong>Carbon Fluxes in the Coastal Ocean: Synthesis,
Boundary Processes, and Future Trends.</strong> Annual Review of Earth
and Planetary Sciences, 50(1), 593–626. <a
href="https://doi.org/10.1146/annurev-earth-032320-090746"
class="uri">https://doi.org/10.1146/annurev-earth-032320-090746</a></p>
<p>Lauvset, S. K., Lange, N., Tanhua, T., Bittig, H. C., Olsen, A.,
Kozyr, A., et al. (2022). <strong>GLODAPv2.2022: the latest version of
the global interior ocean biogeochemical data product.</strong> Earth
System Science Data, 14(12), 5543–5572. <a
href="https://doi.org/10.5194/essd-14-5543-2022"
class="uri">https://doi.org/10.5194/essd-14-5543-2022</a></p>
<p>Poulter, B., Bastos, A., Canadell, J., Ciais, P., Gruber, N., Hauck,
J., et al. (2022). <strong>Inventorying Earth’s Land and Ocean
Greenhouse Gases</strong>. Eos, 103. <a
href="https://doi.org/10.1029/2022eo179084"
class="uri">https://doi.org/10.1029/2022eo179084</a></p>
</div>
<div id="section-3" class="section level3">
<h3>2021</h3>
<p>Honkanen, M., Müller, J. D., Seppälä, J., Rehder, G., Kielosto, S.,
Ylöstalo, P., et al. (2021). <strong>The diurnal cycle of pCO2 in the
coastal region of the Baltic Sea</strong>. Ocean Science, 17(6),
1657–1675. <a href="https://doi.org/10.5194/os-17-1657-2021"
class="uri">https://doi.org/10.5194/os-17-1657-2021</a></p>
<p>Jacobs, E., Bittig, H. C., Gräwe, U., Graves, C. A., Glockzin, M.,
Müller, J. D., et al. (2021). <strong>Upwelling-induced trace gas
dynamics in the Baltic Sea inferred from 8 years of autonomous
measurements on a ship of opportunity</strong>. Biogeosciences, 18(8),
2679–2709. <a href="https://doi.org/10.5194/bg-18-2679-2021"
class="uri">https://doi.org/10.5194/bg-18-2679-2021</a></p>
<p>Müller, J. D., Schneider, B., Gräwe, U., Fietzek, P., Wallin, M. B.,
Rutgersson, A., et al. (2021). <strong>Cyanobacteria net community
production in the Baltic Sea as inferred from profiling pCO2
measurements.</strong> Biogeosciences, 18(17), 4889–4917. <a
href="https://doi.org/10.5194/bg-18-4889-2021"
class="uri">https://doi.org/10.5194/bg-18-4889-2021</a></p>
<p>Sanders, T., Thomsen, J., Müller, J. D., Rehder, G., & Melzner,
F. (2021). <strong>Decoupling salinity and carbonate chemistry: low
calcium ion concentration rather than salinity limits calcification in
Baltic Sea mussels</strong>. Biogeosciences, 18(8), 2573–2590. <a
href="https://doi.org/10.5194/bg-18-2573-2021"
class="uri">https://doi.org/10.5194/bg-18-2573-2021</a></p>
</div>
<div id="section-4" class="section level3">
<h3>2019</h3>
<p>Wanninkhof, R., Pickers, P. A., Omar, A. M., Sutton, A., Murata, A.,
Olsen, A., et al. (2019). <strong>A Surface Ocean CO2 Reference Network,
SOCONET and Associated Marine Boundary Layer CO2 Measurements</strong>.
Frontiers in Marine Science, 6. <a
href="https://doi.org/10.3389/fmars.2019.00400"
class="uri">https://doi.org/10.3389/fmars.2019.00400</a></p>
</div>
<div id="section-5" class="section level3">
<h3>2018</h3>
<p>Müller, Jens D., & Rehder, G. (2018). <strong>Metrology of pH
Measurements in Brackish Waters—Part 2: Experimental Characterization of
Purified meta-Cresol Purple for Spectrophotometric pHT
Measurements</strong>. Frontiers in Marine Science, 5, 177. <a
href="https://doi.org/10.3389/fmars.2018.00177"
class="uri">https://doi.org/10.3389/fmars.2018.00177</a></p>
<p>Müller, J. D., Bastkowski, F., Sander, B., Seitz, S., Turner, D. R.,
Dickson, A. G., & Rehder, G. (2018). <strong>Metrology for pH
Measurements in Brackish Waters—Part 1: Extending Electrochemical pHT
Measurements of TRIS Buffers to Salinities 5–20</strong>. Frontiers in
Marine Science, 5, 176. <a
href="https://doi.org/10.3389/fmars.2018.00176"
class="uri">https://doi.org/10.3389/fmars.2018.00176</a></p>
<p>Müller, J. D., Schneider, B., Aßmann, S., & Rehder, G. (2018).
<strong>Spectrophotometric pH measurements in the presence of dissolved
organic matter and hydrogen sulfide: Perturbations of spec pH
measurements</strong>. Limnology and Oceanography: Methods, 16(2),
68–82. <a href="https://doi.org/10.1002/lom3.10227"
class="uri">https://doi.org/10.1002/lom3.10227</a></p>
<p>Staudinger, C., Strobl, M., Fischer, J. P., Thar, R., Mayr, T.,
Aigner, D., et al. (2018). <strong>A versatile optode system for oxygen,
carbon dioxide, and pH measurements in seawater with integrated battery
and logger: A versatile optode system for O 2 , CO 2 , and pH</strong> .
Limnology and Oceanography: Methods, 16(7), 459–473. <a
href="https://doi.org/10.1002/lom3.10260"
class="uri">https://doi.org/10.1002/lom3.10260</a></p>
<p>Wahl, M., Schneider Covachã, S., Saderne, V., Hiebenthal, C., Müller,
J. D., Pansch, C., & Sawall, Y. (2018). <strong>Macroalgae may
mitigate ocean acidification effects on mussel calcification by
increasing pH and its fluctuations: Biogenic fluctuations mitigate OA
effects</strong>. Limnology and Oceanography, 63(1), 3–21. <a
href="https://doi.org/10.1002/lno.10608"
class="uri">https://doi.org/10.1002/lno.10608</a></p>
</div>
<div id="section-6" class="section level3">
<h3>2017</h3>
<p>Fritzsche, E., Gruber, P., Schutting, S., P. Fischer, J., Strobl, M.,
D. Müller, J., et al. (2017). <strong>Highly sensitive
poisoning-resistant optical carbon dioxide sensors for environmental
monitoring</strong>. Analytical Methods, 9(1), 55–65. <a
href="https://doi.org/10.1039/C6AY02949C"
class="uri">https://doi.org/10.1039/C6AY02949C</a></p>
<p>Saderne, V., Fietzek, P., Müller, J. D., Körtzinger, A., &
Hiebenthal, C. (2017). <strong>Intense pCO2 and [O2] Oscillations in a
Mussel-Seagrass Habitat: Implications for Calcification</strong>.
Biogeosciences Discussions, 1–33. <a
href="https://doi.org/10.5194/bg-2017-351"
class="uri">https://doi.org/10.5194/bg-2017-351</a></p>
</div>
<div id="section-7" class="section level3">
<h3>2016</h3>
<p>Müller, J. D., Schneider, B., & Rehder, G. (2016).
<strong>Long-term alkalinity trends in the Baltic Sea and their
implications for CO2-induced acidification</strong>. Limnology and
Oceanography, 61(6), 1984–2002. <a
href="https://doi.org/10.1002/lno.10349"
class="uri">https://doi.org/10.1002/lno.10349</a></p>
</div>
<div id="section-8" class="section level3">
<h3>2015</h3>
<p>Schulz, J., Möller, K. O., Bracher, A., Hieronymi, M., Cisewski, B.,
Zielinski, O., et al. (2015). <strong>Aquatische Optische Technologien
in Deutschland</strong>. Marine Science Reports -
Meereswissenschaftliche Berichte, 97, 1–83. <a
href="https://doi.org/10.12754/msr-2015-97"
class="uri">https://doi.org/10.12754/msr-2015-97</a></p>
<p>Wahl, Martin, Buchholz, B., Winde, V., Golomb, D., Guy-Haim, T.,
Müller, J., et al. (2015). <strong>A mesocosm concept for the simulation
of near-natural shallow underwater climates: The Kiel Outdoor
Benthocosms (KOB): Mesocosms with natural fluctuations and delta
treatments.</strong> Limnology and Oceanography: Methods, 13(11),
651–663. <a href="https://doi.org/10.1002/lom3.10055"
class="uri">https://doi.org/10.1002/lom3.10055</a></p>
<div style="margin-bottom:50px;">
</div>
<hr />
</div>
</div>
<div id="books" class="section level2">
<h2>Books</h2>
<p>Schneider, B. and Müller, J.D. (2017)<br />
<strong>Biogeochemical Transformations in the Baltic Sea: Observations
Through Carbon Dioxide Glasses</strong><br />
Springer International Publishing | <a
href="https://www.springer.com/de/book/9783319616988"
target="_blank">doi:10.1007/978-3-319-61699-5</a></p>
<div style="margin-bottom:50px;">
</div>
<hr />
</div>
<div id="selected-talks-and-posters-updated-until-2019"
class="section level2">
<h2>Selected Talks and Posters (updated until 2019)</h2>
<div id="section-9" class="section level3">
<h3>2019</h3>
<p>Müller J.D.<br />
<strong>Neue pH-Messmethode ermöglicht erstmals die Überwachung weiter
Ostseebereiche</strong><br />
<a href="presentations/190604_BSH_MUS_mueller.pdf"
target="_blank">Talk</a> | BSH Meeresumwelt-Symposium 2019 | Hamburg |
04.06.2019</p>
<p>Müller J.D.<br />
<strong>Ocean Acidification in the Baltic Sea - Involved Processes,
Metrology of pH in Brachish Waters, and Calcification under Fluctuating
Conditions</strong><br />
<a href="presentations/190527_Mueller_Jens_Wasser.pdf"
target="_blank">Talk</a> | Wasser 2019 | Erfurt | 27.05.2019</p>
<p>Müller J.D.<br />
<strong>Ozeanversauerung in der Ostsee: pH-Veränderungen mit neuer
Messtechnik und Langzeit-Studien auf der Spur</strong><br />
<a href="presentations/190219_Mueller_Jens_Briese.pdf"
target="_blank">Talk</a> | Briese award ceremony | Warnemünde |
19.02.2019</p>
</div>
<div id="section-10" class="section level3">
<h3>2018</h3>
<p>Müller J.D., Schneider B., Rehder G.<br />
<strong>Long-term alkalinity increase in the Baltic Sea buffers
CO<sub>2</sub>-induced acidification</strong><br />
<a
href="presentations/180212_Mueller_AT-Trends_Ocean_Sciences_no_appendix.pdf"
target="_blank">Talk</a> | Ocean Sciences Meeting | Portland |
12.02.2018</p>
</div>
<div id="section-11" class="section level3">
<h3>2017</h3>
<p>Müller J.D., Bastkowski F., Schneider B., Rehder G.<br />
<strong>Updating pH measurements in brackish waters: Characterization of
the indicator dye m-Cresol purple based on newly available TRIS
buffers</strong><br />
<a href="presentations/170613_Mueller_BSSC_pH_Poster.pdf"
target="_blank">Poster</a> | Baltic Sea Science Congress | Rostock |
17.06.2017</p>
<p>Müller J.D., Schneider B.<br />
<strong>High-resolution pCO<sub>2</sub> measurements on a cargo ship in
the Baltic Sea: Patterns and trends derived from a synoptic look at 13
years of observations</strong><br />
<a href="presentations/170612_Mueller_BSSC_pCO2_Poster.pdf"
target="_blank">Poster</a> | Baltic Sea Science Congress | Rostock |
17.06.2017.</p>
</div>
<div id="section-12" class="section level3">
<h3>2016</h3>
<p>Müller J.D., Schneider B., Rehder G.<br />
<strong>Long-term alkalinity trends in the Baltic Sea and their
implications for CO<sub>2</sub>-induced acidification</strong><br />
Talk and Poster | 1st Baltic Earth Conference | Nida | 17.06.2016</p>
<p>Müller J.D., Aßmann S., Turner D., Schneider B., Rehder G.<br />
<strong>PINBAL: Development of a spectrophotometric pH-measurement
system for monitoring in the Baltic Sea</strong><br />
Talk | Quasimeme Ocean Acidification Workshop | Southampton |
04.02.2016</p>
</div>
<div id="section-13" class="section level3">
<h3>2015</h3>
<p>Müller J., Schneider B., Rehder G.<br />
<strong>Long-term alkalinity trends in the Baltic Sea and their
implications for CO<sub>2</sub>-induced acidification</strong><br />
Talk | IOW symposium “Little salts and many protons: Acid-Base System
Studies in the Baltic Sea” | 04.12.2015</p>
<p>Müller J.D., Schneider B., Rehder G.<br />
<strong>Take time! Long-term Alkalinity Trends in the Baltic Sea and
their Implications for CO<sub>2</sub>-induced
Acidification</strong><br />
Invited Talk | HZG Seminar talk | Helmholtz-Zentrum Geesthacht |
27.11.2015</p>
<p>Müller J., Schneider B., Aßmann S., Hammer K., Rehder G.<br />
<strong>Spectrophotometric pH measurements in the Baltic Sea: necessity,
challenges and solutions</strong><br />
Talk | Wasser 2015 | Schwerin | 11.05.2015</p>
<p>Müller J., Schneider B., Aßmann S., Hammer K., Rehder G.<br />
<strong>Spectrophotometric pH measurements in the Baltic Sea: necessity,
challenges and solutions</strong><br />
Talk | ASLO 2015 - Aquatic Sciences Meeting | Grenada | 23.02.2015</p>
<div style="margin-bottom:50px;">
</div>
<hr />
</div>
</div>
<div id="phd-thesis" class="section level2">
<h2>PhD Thesis</h2>
<p><strong>Ocean Acidification in the Baltic Sea: Involved Processes,
Metrology of pH in Brackish Waters, and Calcification under Fluctuating
Conditions</strong><br />
May 2018 | Leibniz-Institute for Baltic Sea Research Warnemünde
(IOW)<br />
Grade: with honors (summa cum laude)<br />
Supervisor: Prof. Dr. Gregor Rehder | Mentor: Dr. Bernd Schneider<br />
<a
href="http://rosdok.uni-rostock.de/resolve/id/rosdok_disshab_0000001963"
target="_blank">doi:10.18453/rosdok_id00002303</a></p>
<div style="margin-bottom:50px;">
</div>
<hr />
</div>
<div id="patents" class="section level2">
<h2>Patents</h2>
<div id="pending" class="section level3">
<h3>Pending</h3>
<p>Topic: pH methodology<br />
Status: German patent registration on priorization stage, publication of
registration expected mid-2020</p>
<div style="margin-bottom:50px;">
</div>
<hr />
</div>
</div>
<div id="reviewer-activity" class="section level2">
<h2>Reviewer activity</h2>
<p>I’ve reviewed manuscripts for:</p>
<p><a href="https://www.nature.com/ncomms/" target="_blank">Nature
communications</a><br />
<a href="https://www.journals.elsevier.com/marine-chemistry"
target="_blank">Marine Chemistry</a><br />
<a
href="https://www.aslo.org/aslo-publications/limnology-and-oceanography-methods/"
target="_blank">Limnology and Oceanography: Methods</a><br />
<a href="https://www.ocean-science.net/" target="_blank">Ocean
Science</a><br />
<a href="https://essd.copernicus.org/" target="_blank">Earth System
Science Data</a><br />
<a href="https://www.frontiersin.org/journals/marine-science#"
target="_blank">Frontiers in Marine Science</a></p>
<div style="margin-bottom:50px;">
</div>
<hr />
</div>
<div id="editor-activity" class="section level2">
<h2>Editor activity</h2>
<p>I’ve acted as a guest editor for the</p>
<p><a href="https://tos.org/oceanography/issue/volume-36-supplement-1"
target="_blank">SUPPLEMENT of Oceanography | Frontiers in Ocean
Observing: Emerging Technologies for Understanding and Managing a
Changing Ocean</a></p>
<div style="margin-bottom:50px;">
</div>
<hr />
</div>
<div id="footer">
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<p>Compiled in R. Updated June 2023. All rights reserved.</p>
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