{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":792135407,"defaultBranch":"master","name":"smk_sv","ownerLogin":"jasonwong-lab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2024-04-26T03:43:21.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/54127475?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1720341648.0","currentOid":""},"activityList":{"items":[{"before":"ca1073717d6b7cff1313810023724c32de380320","after":"f74f5d9336e38be4163fb281265ae0a901abe39c","ref":"refs/heads/without_docker","pushedAt":"2024-07-24T03:58:27.000Z","pushType":"push","commitsCount":10,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"delete samples-all.csv","shortMessageHtmlLink":"delete samples-all.csv"}},{"before":"4647867b14669f7ebcb8b7daa912991c2e8ece6c","after":"1555de59e388a6d7775500f474a54ff59241a0af","ref":"refs/heads/master","pushedAt":"2024-07-24T03:40:20.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"chore: Update getting started instructions and configuration files","shortMessageHtmlLink":"chore: Update getting started instructions and configuration files"}},{"before":"b3c3891558efc79fd0290d50e0e713f279dbeac4","after":"ca1073717d6b7cff1313810023724c32de380320","ref":"refs/heads/without_docker","pushedAt":"2024-07-15T03:41:52.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"delete samples-all.csv","shortMessageHtmlLink":"delete samples-all.csv"}},{"before":"c2031f62a9e1df3951a0bf86fd5385a649939710","after":"4647867b14669f7ebcb8b7daa912991c2e8ece6c","ref":"refs/heads/master","pushedAt":"2024-07-15T02:59:11.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"chore: Remove samples-all.csv","shortMessageHtmlLink":"chore: Remove samples-all.csv"}},{"before":"547c066d40d4c4ae7941c51fa73658792c6752eb","after":"c2031f62a9e1df3951a0bf86fd5385a649939710","ref":"refs/heads/master","pushedAt":"2024-07-15T02:56:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"chore: Remove samples-all.csv","shortMessageHtmlLink":"chore: Remove samples-all.csv"}},{"before":"44c31a04d6a6aee879c2c3e8734636a702f6b31a","after":"547c066d40d4c4ae7941c51fa73658792c6752eb","ref":"refs/heads/master","pushedAt":"2024-07-15T02:55:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"add samples-all.csv","shortMessageHtmlLink":"add samples-all.csv"}},{"before":"812ce6a780c335de54cfff762499809d82b79e70","after":"44c31a04d6a6aee879c2c3e8734636a702f6b31a","ref":"refs/heads/master","pushedAt":"2024-07-15T02:53:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"chore: Update dependencies for workflows","shortMessageHtmlLink":"chore: Update dependencies for workflows"}},{"before":"0c1b97b40dfbde1665952ff7133f8f83933aebe3","after":"b3c3891558efc79fd0290d50e0e713f279dbeac4","ref":"refs/heads/without_docker","pushedAt":"2024-07-12T06:33:37.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"delete samples-all.csv","shortMessageHtmlLink":"delete samples-all.csv"}},{"before":"32ff965ee58bf82b925c9e82bbbbffbcecc536b5","after":"0c1b97b40dfbde1665952ff7133f8f83933aebe3","ref":"refs/heads/without_docker","pushedAt":"2024-07-12T06:30:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"delete samples-all.csv","shortMessageHtmlLink":"delete samples-all.csv"}},{"before":"2d00c80d2cbbce337f13bb8918a2be10d81f52cd","after":"812ce6a780c335de54cfff762499809d82b79e70","ref":"refs/heads/master","pushedAt":"2024-07-11T01:47:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"chore: Add note for cluster users without Singularity support","shortMessageHtmlLink":"chore: Add note for cluster users without Singularity support"}},{"before":"ca37a6c5ce4285dd60727186cbb4f11ce3cbc8c4","after":"32ff965ee58bf82b925c9e82bbbbffbcecc536b5","ref":"refs/heads/without_docker","pushedAt":"2024-07-11T01:42:45.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"Update container and conda environments for svision.smk, convert_annotation.sh, and filter_sv.sh","shortMessageHtmlLink":"Update container and conda environments for svision.smk, convert_anno…"}},{"before":"427ac0b946fcd1c9eae908d49d9c026c3cebd998","after":"ca37a6c5ce4285dd60727186cbb4f11ce3cbc8c4","ref":"refs/heads/without_docker","pushedAt":"2024-07-07T11:12:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"reduce dependencies in yaml files","shortMessageHtmlLink":"reduce dependencies in yaml files"}},{"before":null,"after":"427ac0b946fcd1c9eae908d49d9c026c3cebd998","ref":"refs/heads/without_docker","pushedAt":"2024-07-07T08:40:48.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"Use the pipeline without the docker image of smk_sv\n\nUpdate container and conda environments for svision.smk, convert_annotation.smk, and filter_sv.smk\n\nchange the author name and email","shortMessageHtmlLink":"Use the pipeline without the docker image of smk_sv"}},{"before":"388c1c63908347257d4fad29f92024884d7ef895","after":"2d00c80d2cbbce337f13bb8918a2be10d81f52cd","ref":"refs/heads/master","pushedAt":"2024-07-06T09:29:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"chore: Update delly.smk to use conda environment and reduce the container size","shortMessageHtmlLink":"chore: Update delly.smk to use conda environment and reduce the conta…"}},{"before":"e13dc914a2413a3515a9639be7fddd445c045a2e","after":"388c1c63908347257d4fad29f92024884d7ef895","ref":"refs/heads/master","pushedAt":"2024-07-06T07:08:29.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"refactor: Update NUMBER_CALLERS calculation to use list comprehension","shortMessageHtmlLink":"refactor: Update NUMBER_CALLERS calculation to use list comprehension"}},{"before":"234136e1d9af43ca35c03e97674975c8f48c6cfa","after":"e13dc914a2413a3515a9639be7fddd445c045a2e","ref":"refs/heads/master","pushedAt":"2024-07-05T07:10:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"chore: Update default memory allocation for rules in config-test.yaml","shortMessageHtmlLink":"chore: Update default memory allocation for rules in config-test.yaml"}},{"before":"03bf3a0b52b5d61449669c7d189bae2ab8e80f43","after":"234136e1d9af43ca35c03e97674975c8f48c6cfa","ref":"refs/heads/master","pushedAt":"2024-07-05T06:58:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"chore: Update memory allocation for rules in config-test.yaml and config.v8+.yaml","shortMessageHtmlLink":"chore: Update memory allocation for rules in config-test.yaml and con…"}},{"before":"d54e1b83dd10106dd80f15ba556feb47d22851fb","after":"03bf3a0b52b5d61449669c7d189bae2ab8e80f43","ref":"refs/heads/master","pushedAt":"2024-07-04T11:11:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"chore: Update cluster-generic-submit-cmd in config.v8+.yaml","shortMessageHtmlLink":"chore: Update cluster-generic-submit-cmd in config.v8+.yaml"}},{"before":"1712c8a0e8934caa048518913be6806ff912fcfb","after":"d54e1b83dd10106dd80f15ba556feb47d22851fb","ref":"refs/heads/master","pushedAt":"2024-07-04T09:55:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"feat: Add \"dir_run\" property to the config schema","shortMessageHtmlLink":"feat: Add \"dir_run\" property to the config schema"}},{"before":"202e3981006d039847a8ab9b11203625ca5eefc7","after":"1712c8a0e8934caa048518913be6806ff912fcfb","ref":"refs/heads/master","pushedAt":"2024-07-04T09:50:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"chore: Update workflow rules to improve code readability and maintainability","shortMessageHtmlLink":"chore: Update workflow rules to improve code readability and maintain…"}},{"before":"9cf418824657d2f74cec07e3f4b34698dc81e419","after":"202e3981006d039847a8ab9b11203625ca5eefc7","ref":"refs/heads/master","pushedAt":"2024-07-04T05:50:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"refactor: Remove container specification in several rules","shortMessageHtmlLink":"refactor: Remove container specification in several rules"}},{"before":"8f53787de62a495605dd58d9e89a5b5cfa187fc2","after":"9cf418824657d2f74cec07e3f4b34698dc81e419","ref":"refs/heads/master","pushedAt":"2024-07-03T07:48:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"remove source ... in severus.smk","shortMessageHtmlLink":"remove source ... in severus.smk"}},{"before":"cb3852c9b73135fa23cf03af6623773592f83a96","after":"8f53787de62a495605dd58d9e89a5b5cfa187fc2","ref":"refs/heads/master","pushedAt":"2024-07-03T07:44:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"rename annotator.yaml to annotators.yaml","shortMessageHtmlLink":"rename annotator.yaml to annotators.yaml"}},{"before":"8ed437eb47a74f612153d809f94fd3b77672261d","after":"cb3852c9b73135fa23cf03af6623773592f83a96","ref":"refs/heads/master","pushedAt":"2024-07-03T07:40:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"update README.md","shortMessageHtmlLink":"update README.md"}},{"before":"40cd033995bf756f3dde2f11879d0a76006ec639","after":"8ed437eb47a74f612153d809f94fd3b77672261d","ref":"refs/heads/master","pushedAt":"2024-07-03T07:39:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"update README.md","shortMessageHtmlLink":"update README.md"}},{"before":"bd5b7ac072d35954ef8466f9a6c8821956c9b865","after":"40cd033995bf756f3dde2f11879d0a76006ec639","ref":"refs/heads/master","pushedAt":"2024-07-03T07:35:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"update README.md","shortMessageHtmlLink":"update README.md"}},{"before":"169576a4aac39b5a4089102ca57638cdc4158335","after":"bd5b7ac072d35954ef8466f9a6c8821956c9b865","ref":"refs/heads/master","pushedAt":"2024-07-03T05:29:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"update README.md","shortMessageHtmlLink":"update README.md"}},{"before":"e211331302271ffdf59ffe7d3fef8509409ed256","after":"169576a4aac39b5a4089102ca57638cdc4158335","ref":"refs/heads/master","pushedAt":"2024-07-03T05:17:22.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"add conda dependencies to reduce the size of the container","shortMessageHtmlLink":"add conda dependencies to reduce the size of the container"}},{"before":"e472816b1c6bef0bc97bd481ce40f8c277915144","after":"e211331302271ffdf59ffe7d3fef8509409ed256","ref":"refs/heads/master","pushedAt":"2024-07-02T05:42:52.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"update README.md","shortMessageHtmlLink":"update README.md"}},{"before":"4aafe1b62c90cd06a6401a6d0e1603462c8235fd","after":"e472816b1c6bef0bc97bd481ce40f8c277915144","ref":"refs/heads/master","pushedAt":"2024-06-30T09:35:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mhjiang97","name":"Minghao Jiang","path":"/mhjiang97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53030037?s=80&v=4"},"commit":{"message":"small typo in utils.R","shortMessageHtmlLink":"small typo in utils.R"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEh3_I-gA","startCursor":null,"endCursor":null}},"title":"Activity · jasonwong-lab/smk_sv"}