From 1ccfa75000f959a29148301db4c74a193a6b5da6 Mon Sep 17 00:00:00 2001
From: tjakobi <tjakobi@arizona.edu>
Date: Mon, 22 Apr 2024 15:30:50 -0700
Subject: [PATCH] Adding download mode to CI

---
 .github/workflows/run_circhemy_ci.yml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.github/workflows/run_circhemy_ci.yml b/.github/workflows/run_circhemy_ci.yml
index 920f52d..429edf1 100644
--- a/.github/workflows/run_circhemy_ci.yml
+++ b/.github/workflows/run_circhemy_ci.yml
@@ -40,6 +40,9 @@ jobs:
       run: |
          circhemy --version
          which circhemy
+    - name: Download circhemy database
+      run: |
+         circhemy download
     - name: Running circhemy convert test
       run: |
          cat `python3 -c "import site; print(site.getsitepackages()[0])"`/circhemy/data/circhemy_query.results | circhemy convert  -q STDIN -i circBase -o CircAtlas2 circBase Genome > convert_output