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<!DOCTYPE html>
<html lang='en'>
<head>
<title>Iva Veseli</title>
<meta charset='utf-8' />
<meta name='viewport' content='width=device-width,initial-scale=1.0,shrink-to-fit=no' />
<link rel='stylesheet' href='css/screen.css' />
<!--<link rel="stylesheet" href="//basehold.it/22"> Baseline grid overlay for design purposes -->
<script src="js/modernizr.js"></script>
</head>
<body>
<div id='page'> <!-- for media query to fix page width -->
<header>
<h1>Iva Veseli</h1>
<figure id="header-photo"
aria-labelledby="caption-header"
aria-describedby="about">
<img
srcset="img/webpage-header_600x300.png 600w,
webpage-header_400x250.png 400w"
sizes="(min-width: 830px) 50vw, (min-width: 320px) 100vw, 100vw"
src="img/webpage-header_400x250.png"
alt="Venn diagram of biology and computer science" />
<figcaption id='caption-header'>At the intersection of biology and computer science</figcaption>
</figure>
</header>
<main>
<article>
<h2 id='about'>About Me</h2>
<p>
I am a B.S. Biology/M.S. Computer Science co-terminal degree student at
Illinois Institute of Technology in Chicago, IL, currently in my fourth and
final year. Since 2015, I've been a research assistant in the Pombert Lab as
well as a teaching assistant in the Computer Science Department. I am
interested in research questions in computational biology and
bioinformatics, specifically in the field of genomics. Though my research
and interests are interdisciplinary and I spend most of my time on a
computer, at heart I consider myself a biologist - I enjoy programming and
often write computer programs that will facilitate my research, but
ultimately it is the biologically-relevant results of my projects that pique
my curiosity and motivate my studies.
</p>
</article>
<article class='project-type' id='research'>
<h2>Research</h2>
<div class='projects'>
<!--Current projects -->
<section class='projectbox'>
<h3>Comparative Genomics of <i>Neisseria</i> Species</h3>
<p>
I have sequenced six <i>Neisseria</i> species and am studying how they compare to
the rest of the genus. I am also investigating the Oxford Nanopore sequencing
technology, and how it can be used in tandem with Illumina sequencing.
</p>
</section>
<!--Past projects-->
<section class='projectbox'>
<h3>SNP Analysis Pipeline</h3>
<p>
The Pombert Lab has developed a pipeline that integrates common software for
read mapping, SNP calling, clustering, and visualization. I worked on a script
that generates synthetic sequence reads from genome assemblies.
</p>
</section>
<section class='projectbox'>
<h3>Comparative Genomics of <i>Vitreoscilla</i> sp. C1</h3>
<p>
The first bacterial hemoglobin was isolated from <i>Vitreoscilla</i> sp. strain C1.
I sequenced the genome of this species and compared it to its relatives in the
Neisseriaceae family, including <i>Vitreoscilla stercoraria</i>.
</p>
</section>
</div>
</article>
<article class='project-type' id='teaching'>
<h2>Teaching</h2>
<div class='projects'>
<!--Current courses -->
<section class='projectbox'>
<h3>CS105: Introduction to Computer Programming</h3>
<p>
A C++ class for students not in computer science disciplines. This is my
second semester teaching the lab section of the course.
</p>
</section>
<!--Previous courses -->
<section class='projectbox'>
<h3>CS115: Introduction to Object-oriented Programming</h3>
<p>
A Java class for computer science students. I have taught the lab section
for this course for four semesters so far.
</p>
</section>
</div>
</article>
<article class='project-type' id='courseprojects'>
<h2>Course Projects</h2>
<div class='projects'>
<!--Current projects -->
<section class='projectbox'>
<h3>Student Cluster Competition 2017</h3>
<p>
I am part of a team of students who will be competing in the Student
Cluster Competition this November. We are profiling and optimizing
scientific applications so that they will run efficiently and with
maximum performance on our custom-built cluster during the contest.
</p>
</section>
<!--Past projects-->
<section class='projectbox'>
<h3>GUI design for AIGDock</h3>
<p>
In Summer 2016, I took part in a web development team project. We designed a graphical user
interface for AIGDock, a protein-ligand docking software developed by Dr. David Minh's lab.
Our aim was to increase the accessibility of this software for researchers without
computational backgrounds.
</p>
</section>
<section class='projectbox'>
<h3>Classification of Horizontal Gene Transfer</h3>
<p>
For a Machine Learning course in Fall 2016, I developed classification
models to predict instances of horizontal gene transfer in bacterial
genomes.
</p>
</section>
<section class='projectbox'>
<h3>Automated Essay Grading</h3>
<p>
For a Data Mining course in Spring 2017, my team explored feature
engineering for accurate score classification of essays and short answer
responses, which could be used by primary school teachers to provide faster
feedback to their students.
</p>
</section>
</div>
</article>
<!-- navbar with links to jump to content -->
<nav id='navigation'>
<ul>
<li><a href='#about'>About</a></li>
<li><a href='#research'>Research</a></li>
<li><a href='#teaching'>Teaching</a></li>
<li><a href='#courseprojects'>Projects</a></li>
</ul>
</nav>
</main>
<footer>
<p>Page code and design by Iva Veseli. Source code on <a href='https://github.com/ivagljiva/webpage'>Github</a>.</p>
<!-- links to relevant communication platforms-->
<nav id='contact'>
<ul>
<li> <a href='mailto:iva.veseli@gmail.com'>Email</a></li>
<li> <a href='https://www.linkedin.com/in/iva-veseli/'>LinkedIn</a></li>
<li> <a href='http://orcid.org/0000-0003-2390-5286'>ORCID</a></li>
<li> <a href='https://github.com/ivagljiva'>Github</a></li>
</ul>
</nav>
</footer>
</div>
</body>
</html>