visProteomics helps with the exploration and visualization of proteomics data obtained with the process of fractionation. Fractionation of samples is often used in proteomics to improve signal-to-noise ratio and proteome coverage. visProteomics explores attributes of proteins detected in different fractions through both graphical and tabular representation.
Venn/Euler diagrams are widely used for data summarization and there are many plotting tools available. visProteomics defines a complementary tabular function. The resulting data frame summarizes attributes of elements found in different regions of the Venn diagram. This generic function can be used for any data set.
devtools::install_github("ivabudimir/visProteomics")For installation of vignettes together with the package, add “build_vignettes=TRUE”.
Please check visProteomics website.
Alternatively, read vignettes merge-fractions and vis-fractions for the exploration and visualization of a fractionated proteomics sample. For the tabular Venn function, read explore-venn vignette.
visProteomics is open source software, licensed under GPL-3.