para check out exist

[ErinZhang1998]

Hi Michael

From genomewiki

Now that we have a template and a data list, we can create the jobList

gensub2 input.list single gsub-template jobList

This takes each line of input.list and applies it to the template, substituting whatever special substitution words you have used.

[ku.sdsc.edu:testParasol3> head jobList
paraTestJob 99 -output={check out line+ out/job0.out}
paraTestJob 24 -output={check out line+ out/job1.out}
paraTestJob 65 -output={check out line+ out/job2.out}
paraTestJob 76 -output={check out line+ out/job3.out}
paraTestJob 34 -output={check out line+ out/job4.out}
paraTestJob 23 -output={check out line+ out/job5.out}
paraTestJob 11 -output={check out line+ out/job6.out}
paraTestJob 1 -output={check out line+ out/job7.out}
paraTestJob 2 -output={check out line+ out/job8.out}
paraTestJob 3 -output={check out line+ out/job9.out}

We are showing off a parasol "para" feature,
{check out line+ out/job9.out}
that it can automatically check that the output exists and contains at least one line.

** Does paraSlurm.perl provide the same feature? **

[MichaelHiller]

No, it does not.
Your jobList need to be commands that can be executed in a linux command line.
I typically create jobLists just with awk, looping over all input files.