diff --git a/TeachingModule/AnalysisMSData_FragPipe.qmd b/TeachingModule/AnalysisMSData_FragPipe.qmd
index 8cf4b82..88e53ce 100644
--- a/TeachingModule/AnalysisMSData_FragPipe.qmd
+++ b/TeachingModule/AnalysisMSData_FragPipe.qmd
@@ -22,11 +22,9 @@ What is FTP, and what is its functionality?
 :::
 
 
-For downloading the data, we will use the **Proteomics Sandbox Application** on UCloud. This platform allows us to access the necessary storage capacity as well as the computational power required to execute this process.
+To download the data, we will use the **Proteomics Sandbox Application** on UCloud. This platform provides the necessary storage capacity and computational power to perform this process.
 
-The **Proteomics Sandbox Application** is a virtual environment that includes multiple software tools, including **FragPipe** for analyzing proteomics data.
-
-You can find the **Proteomics Sandbox Application** on UCloud [here](https://cloud.sdu.dk/app/jobs/create?app=proteomics).
+The **Proteomics Sandbox Application** is a virtual environment that includes various software tools, such as **FragPipe**, for analyzing proteomics data.
 
 First, we will download the data for the sample files to be used in **FragPipe**. Then, we will launch **FragPipe** to run the first analysis of the data. Before doing so, we have some questions regarding **FragPipe** and its usability:
 
@@ -34,20 +32,19 @@ First, we will download the data for the sample files to be used in **FragPipe**
 What is FragPipe, and what are its applications?
 :::
 
-
 ::: {.question}
-If FragPipe were not used for this part of the teaching module, which alternative software tools could be employed? Please provide a few examples.
+If FragPipe was not used for this part of the teaching module, which alternative software tools could be employed? Please provide a few examples.
 :::
 
-
 ::: {.question}
 What are the benefits of using FragPipe?
 :::
 
-
 Now that we know what we want to do and why, it is time to start the **Proteomics Sandbox** application, or job.
 Simple analyses in **FragPipe** may only require 8 GB of RAM, while large-scale or complex analyses may require 24 GB of memory or more ([FragPipe Documentation](https://fragpipe.nesvilab.org/docs/tutorial_fragpipe.html#:~:text=FragPipe%20runs%20on%20Windows%20and,24%20GB%20memory%20or%20more.)), which is why we will allocate 24 GB for this exercise.
 
+You can access the **Proteomics Sandbox Application** on UCloud [here](https://cloud.sdu.dk/app/jobs/create?app=proteomics&version=Oct2024).
+
 In UCloud, the settings should look like this:
 
 ![](images/TeachingModuleInstructions/UCloud_settings.PNG){width=750 fig-align="center"}
@@ -83,7 +80,9 @@ At the bottom of the page, you will find the FTP-server address where the data i
 Please locate the address.
 :::
 
-Click on the "Dataset FTP location" link.
+::: {.callout-tip}
+Click on the **Dataset FTP location** link.
+:::
 
 ::: {.question}
 We now have access to the data stored on the FTP server. Please provide a brief description of the contents of the folder on the FTP server.
@@ -96,7 +95,10 @@ To download one sample file from each of the Plex Sets, we will need these URLs
 {{< include ./urls.txt >}}
 ```
 
-(You can also download this list [here](https://github.com/hds-sandbox/proteomics-sandbox/blob/webpage/TeachingModule/urls.txt)).
+::: {.callout-tip collapse="true"}
+## Tip to Download of Data
+You can also download this list [here](https://github.com/hds-sandbox/proteomics-sandbox/blob/webpage/TeachingModule/urls.txt).
+:::
 
 ::: {.callout-note}
 We recommend to open this material inside **Proteomics Sandbox** to be able to copy & paste or download the file directly into the environment.
@@ -119,6 +121,7 @@ Now that FragPipe is launched, we need to configure the settings before running
 ::: {.callout-note}
 Some of the information you will need in this section can be found in **Supplementary Information** to the study. Open the **Supplementary Information**  and go to page 25, **Supplementary Methods**.
 :::
+
 Go to the `Workflow` tab to set up the workflow for the analysis and import the data you just downloaded.
 
 ::: {.question}
diff --git a/_quarto.yml b/_quarto.yml
index 902f81c..a3aa25a 100644
--- a/_quarto.yml
+++ b/_quarto.yml
@@ -7,23 +7,33 @@ website:
     left:
       - text: Introduction
         href: index.qmd
-      - text: Getting Started
-        href: gettingstarted.qmd
-      - text: Setup
-        href: setup.qmd
-      - text: ColabFold
-        href: colabfold.qmd
-      - text: Course Materials
-        href: coursematerials.qmd
-      - text: Teaching Module
-        href: teachingmodule.qmd
-      - text: Contributors
-        href: contributors.qmd
+      - sidebar:
+          id: ProteomicsSidebar
+          title: "Navigation"
+          style: "docked"
+          background: "light"
+          collapse-level: 2
+          contents:
+            - id: ProteomicsSandboxApp
+              title: "Proteomics Sandbox App"
+              contents:
+                - text: Getting Started
+                  href: gettingstarted.qmd
+                - text: Setup
+                  href: setup.qmd
+            - text: ColabFold
+              href: colabfold.qmd
+            - text: Course Materials
+              href: coursematerials.qmd
+            - text: Teaching Module
+              href: teachingmodule.qmd
+            - text: Contributors
+              href: contributors.qmd
 
 format:
   html:
     theme:
-          light: [materia, css/materialight.scss]
-          dark: darkly
+      light: [materia, css/materialight.scss]
+      dark: darkly
     toc: true
     css: css/styles.css