diff --git a/test/rna004-models/rna004.nucleotide.5mer.model b/test/rna004-models/rna004.nucleotide.5mer.model
new file mode 100755
index 00000000..82ed67c1
--- /dev/null
+++ b/test/rna004-models/rna004.nucleotide.5mer.model
@@ -0,0 +1,1031 @@
+#ont_model_name	none
+#kit	none
+#strand	template
+#k	5
+#alphabet	nucleotide
+#original_file	none
+kmer	level_mean	level_stdv	sd_mean	sd_stdv	weight
+AAAAA	95.82620936892796	3.0	1.0	1.0	1.0
+AAAAC	93.94534245544321	3.0	1.0	1.0	1.0
+AAAAG	96.75244217476782	3.0	1.0	1.0	1.0
+AAAAU	100.11003605201408	3.0	1.0	1.0	1.0
+AAACA	80.52107965758883	3.0	1.0	1.0	1.0
+AAACC	78.0608562659247	3.0	1.0	1.0	1.0
+AAACG	74.00812263706015	3.0	1.0	1.0	1.0
+AAACU	84.49851284450727	3.0	1.0	1.0	1.0
+AAAGA	108.77035360010254	3.0	1.0	1.0	1.0
+AAAGC	95.18957240215708	3.0	1.0	1.0	1.0
+AAAGG	97.60129573899219	3.0	1.0	1.0	1.0
+AAAGU	101.5521989303327	3.0	1.0	1.0	1.0
+AAAUA	94.09832310112735	3.0	1.0	1.0	1.0
+AAAUC	95.44718824854327	3.0	1.0	1.0	1.0
+AAAUG	78.18692355388767	3.0	1.0	1.0	1.0
+AAAUU	95.18957240215708	3.0	1.0	1.0	1.0
+AACAA	74.44112929936631	3.0	1.0	1.0	1.0
+AACAC	69.86647833170001	3.0	1.0	1.0	1.0
+AACAG	80.3248699230055	3.0	1.0	1.0	1.0
+AACAU	73.63390162534412	3.0	1.0	1.0	1.0
+AACCA	69.46561259687189	3.0	1.0	1.0	1.0
+AACCC	64.69771688982348	3.0	1.0	1.0	1.0
+AACCG	72.75552179698519	3.0	1.0	1.0	1.0
+AACCU	66.27001768740493	3.0	1.0	1.0	1.0
+AACGA	74.65703773399467	3.0	1.0	1.0	1.0
+AACGC	69.7031637746776	3.0	1.0	1.0	1.0
+AACGG	76.90415569727837	3.0	1.0	1.0	1.0
+AACGU	71.48891031799577	3.0	1.0	1.0	1.0
+AACUA	79.75890617143183	3.0	1.0	1.0	1.0
+AACUC	76.2959133559782	3.0	1.0	1.0	1.0
+AACUG	80.93571164235745	3.0	1.0	1.0	1.0
+AACUU	73.80230108940098	3.0	1.0	1.0	1.0
+AAGAA	109.93333677501815	3.0	1.0	1.0	1.0
+AAGAC	111.01234044909071	3.0	1.0	1.0	1.0
+AAGAG	110.6043524711086	3.0	1.0	1.0	1.0
+AAGAU	115.84039467189294	3.0	1.0	1.0	1.0
+AAGCA	100.78068665803413	3.0	1.0	1.0	1.0
+AAGCC	98.40977100906343	3.0	1.0	1.0	1.0
+AAGCG	99.70462988278295	3.0	1.0	1.0	1.0
+AAGCU	103.63028142087096	3.0	1.0	1.0	1.0
+AAGGA	104.44476240503103	3.0	1.0	1.0	1.0
+AAGGC	99.6576847110738	3.0	1.0	1.0	1.0
+AAGGG	102.55951159961332	3.0	1.0	1.0	1.0
+AAGGU	103.65252854799547	3.0	1.0	1.0	1.0
+AAGUA	108.46386821649175	3.0	1.0	1.0	1.0
+AAGUC	109.156603082218	3.0	1.0	1.0	1.0
+AAGUG	100.90005810977325	3.0	1.0	1.0	1.0
+AAGUU	107.8127511590893	3.0	1.0	1.0	1.0
+AAUAA	78.36647407746253	3.0	1.0	1.0	1.0
+AAUAC	73.22631984959625	3.0	1.0	1.0	1.0
+AAUAG	85.59338036734157	3.0	1.0	1.0	1.0
+AAUAU	78.07074391702294	3.0	1.0	1.0	1.0
+AAUCA	72.80660084947708	3.0	1.0	1.0	1.0
+AAUCC	67.96438524315963	3.0	1.0	1.0	1.0
+AAUCG	74.93763932091056	3.0	1.0	1.0	1.0
+AAUCU	71.43499083664527	3.0	1.0	1.0	1.0
+AAUGA	80.08297649250969	3.0	1.0	1.0	1.0
+AAUGC	73.33906082291048	3.0	1.0	1.0	1.0
+AAUGG	82.79538558676504	3.0	1.0	1.0	1.0
+AAUGU	76.21186832164322	3.0	1.0	1.0	1.0
+AAUUA	77.61352043328077	3.0	1.0	1.0	1.0
+AAUUC	73.66341014448489	3.0	1.0	1.0	1.0
+AAUUG	79.69973171221524	3.0	1.0	1.0	1.0
+AAUUU	72.51660390327108	3.0	1.0	1.0	1.0
+ACAAA	92.09052976087104	3.0	1.0	1.0	1.0
+ACAAC	81.02069839121474	3.0	1.0	1.0	1.0
+ACAAG	93.29942432983735	3.0	1.0	1.0	1.0
+ACAAU	90.80404072635456	3.0	1.0	1.0	1.0
+ACACA	72.26175803284734	3.0	1.0	1.0	1.0
+ACACC	68.72027981260051	3.0	1.0	1.0	1.0
+ACACG	70.2446803712819	3.0	1.0	1.0	1.0
+ACACU	75.89331107146006	3.0	1.0	1.0	1.0
+ACAGA	110.60889659506475	3.0	1.0	1.0	1.0
+ACAGC	95.70757424658491	3.0	1.0	1.0	1.0
+ACAGG	99.8293701614573	3.0	1.0	1.0	1.0
+ACAGU	104.37615516391364	3.0	1.0	1.0	1.0
+ACAUA	77.91133448848697	3.0	1.0	1.0	1.0
+ACAUC	77.60091814951757	3.0	1.0	1.0	1.0
+ACAUG	73.22913199188059	3.0	1.0	1.0	1.0
+ACAUU	79.01580960776492	3.0	1.0	1.0	1.0
+ACCAA	77.09862782801363	3.0	1.0	1.0	1.0
+ACCAC	68.43134809310136	3.0	1.0	1.0	1.0
+ACCAG	85.20038480080204	3.0	1.0	1.0	1.0
+ACCAU	75.75448724127297	3.0	1.0	1.0	1.0
+ACCCA	65.90900334339925	3.0	1.0	1.0	1.0
+ACCCC	60.411426990766685	3.0	1.0	1.0	1.0
+ACCCG	70.73268298599793	3.0	1.0	1.0	1.0
+ACCCU	65.27006268990887	3.0	1.0	1.0	1.0
+ACCGA	85.08943589616831	3.0	1.0	1.0	1.0
+ACCGC	77.92930770750148	3.0	1.0	1.0	1.0
+ACCGG	85.74661752481722	3.0	1.0	1.0	1.0
+ACCGU	80.64078000663874	3.0	1.0	1.0	1.0
+ACCUA	72.51660390327108	3.0	1.0	1.0	1.0
+ACCUC	67.75348001831705	3.0	1.0	1.0	1.0
+ACCUG	78.98454205022914	3.0	1.0	1.0	1.0
+ACCUU	68.75502749723665	3.0	1.0	1.0	1.0
+ACGAA	93.94534245544321	3.0	1.0	1.0	1.0
+ACGAC	93.4139617641573	3.0	1.0	1.0	1.0
+ACGAG	95.5996548164863	3.0	1.0	1.0	1.0
+ACGAU	97.26465423181352	3.0	1.0	1.0	1.0
+ACGCA	83.87508236975374	3.0	1.0	1.0	1.0
+ACGCC	81.40712216079402	3.0	1.0	1.0	1.0
+ACGCG	79.66821502199426	3.0	1.0	1.0	1.0
+ACGCU	86.45611051671538	3.0	1.0	1.0	1.0
+ACGGA	107.32407774846914	3.0	1.0	1.0	1.0
+ACGGC	94.8851173269455	3.0	1.0	1.0	1.0
+ACGGG	99.62747096019936	3.0	1.0	1.0	1.0
+ACGGU	103.529498992139	3.0	1.0	1.0	1.0
+ACGUA	86.50609535315411	3.0	1.0	1.0	1.0
+ACGUC	86.06678289310165	3.0	1.0	1.0	1.0
+ACGUG	79.61713596950237	3.0	1.0	1.0	1.0
+ACGUU	85.3337726893249	3.0	1.0	1.0	1.0
+ACUAA	82.87767966458334	3.0	1.0	1.0	1.0
+ACUAC	73.0982519453524	3.0	1.0	1.0	1.0
+ACUAG	89.24316032567219	3.0	1.0	1.0	1.0
+ACUAU	81.98169241005236	3.0	1.0	1.0	1.0
+ACUCA	71.07672485836207	3.0	1.0	1.0	1.0
+ACUCC	65.12462682906272	3.0	1.0	1.0	1.0
+ACUCG	73.88338235838582	3.0	1.0	1.0	1.0
+ACUCU	71.6906577204949	3.0	1.0	1.0	1.0
+ACUGA	95.0303715212215	3.0	1.0	1.0	1.0
+ACUGC	83.48838750586327	3.0	1.0	1.0	1.0
+ACUGG	92.99983735648848	3.0	1.0	1.0	1.0
+ACUGU	88.879463676515	3.0	1.0	1.0	1.0
+ACUUA	74.83791702378822	3.0	1.0	1.0	1.0
+ACUUC	69.96814555041973	3.0	1.0	1.0	1.0
+ACUUG	79.54477399311328	3.0	1.0	1.0	1.0
+ACUUU	71.70409542451063	3.0	1.0	1.0	1.0
+AGAAA	96.52008272534536	3.0	1.0	1.0	1.0
+AGAAC	88.5396853463734	3.0	1.0	1.0	1.0
+AGAAG	94.51404631516799	3.0	1.0	1.0	1.0
+AGAAU	97.1662028979103	3.0	1.0	1.0	1.0
+AGACA	76.42198064394117	3.0	1.0	1.0	1.0
+AGACC	74.93763932091056	3.0	1.0	1.0	1.0
+AGACG	70.0045521284364	3.0	1.0	1.0	1.0
+AGACU	81.91305863929077	3.0	1.0	1.0	1.0
+AGAGA	110.2930529233885	3.0	1.0	1.0	1.0
+AGAGC	96.68062203561509	3.0	1.0	1.0	1.0
+AGAGG	103.07261881253424	3.0	1.0	1.0	1.0
+AGAGU	105.79819486788014	3.0	1.0	1.0	1.0
+AGAUA	85.64116412177741	3.0	1.0	1.0	1.0
+AGAUC	88.95415973451395	3.0	1.0	1.0	1.0
+AGAUG	71.87533426326806	3.0	1.0	1.0	1.0
+AGAUU	88.72748114280871	3.0	1.0	1.0	1.0
+AGCAA	76.78885083589994	3.0	1.0	1.0	1.0
+AGCAC	70.07202298717874	3.0	1.0	1.0	1.0
+AGCAG	85.78789343454767	3.0	1.0	1.0	1.0
+AGCAU	75.40572344362867	3.0	1.0	1.0	1.0
+AGCCA	68.9127515027479	3.0	1.0	1.0	1.0
+AGCCC	64.50261279133882	3.0	1.0	1.0	1.0
+AGCCG	72.14442795816693	3.0	1.0	1.0	1.0
+AGCCU	66.64844338418587	3.0	1.0	1.0	1.0
+AGCGA	81.66473818287321	3.0	1.0	1.0	1.0
+AGCGC	73.65591455368912	3.0	1.0	1.0	1.0
+AGCGG	82.95281759049715	3.0	1.0	1.0	1.0
+AGCGU	76.08842746845527	3.0	1.0	1.0	1.0
+AGCUA	78.85884951545201	3.0	1.0	1.0	1.0
+AGCUC	75.75448724127297	3.0	1.0	1.0	1.0
+AGCUG	79.2752192797617	3.0	1.0	1.0	1.0
+AGCUU	73.90063365483088	3.0	1.0	1.0	1.0
+AGGAA	106.26705572938617	3.0	1.0	1.0	1.0
+AGGAC	105.87800324102278	3.0	1.0	1.0	1.0
+AGGAG	105.83769592684486	3.0	1.0	1.0	1.0
+AGGAU	111.96036691840172	3.0	1.0	1.0	1.0
+AGGCA	95.50221301460643	3.0	1.0	1.0	1.0
+AGGCC	93.77268507134005	3.0	1.0	1.0	1.0
+AGGCG	95.45272837616118	3.0	1.0	1.0	1.0
+AGGCU	98.86691297124995	3.0	1.0	1.0	1.0
+AGGGA	104.23296360555031	3.0	1.0	1.0	1.0
+AGGGC	96.77039729740251	3.0	1.0	1.0	1.0
+AGGGG	101.0975635802898	3.0	1.0	1.0	1.0
+AGGGU	102.46098875865587	3.0	1.0	1.0	1.0
+AGGUA	105.59895302336659	3.0	1.0	1.0	1.0
+AGGUC	104.14770031589859	3.0	1.0	1.0	1.0
+AGGUG	96.44610700867878	3.0	1.0	1.0	1.0
+AGGUU	104.54786398146717	3.0	1.0	1.0	1.0
+AGUAA	80.33006850341606	3.0	1.0	1.0	1.0
+AGUAC	72.39198151460504	3.0	1.0	1.0	1.0
+AGUAG	88.3627512430721	3.0	1.0	1.0	1.0
+AGUAU	80.11604718738549	3.0	1.0	1.0	1.0
+AGUCA	71.76279674245697	3.0	1.0	1.0	1.0
+AGUCC	66.89792394153456	3.0	1.0	1.0	1.0
+AGUCG	73.88338235838582	3.0	1.0	1.0	1.0
+AGUCU	71.624643532481	3.0	1.0	1.0	1.0
+AGUGA	87.72955856202796	3.0	1.0	1.0	1.0
+AGUGC	78.06600178704689	3.0	1.0	1.0	1.0
+AGUGG	88.1519746255113	3.0	1.0	1.0	1.0
+AGUGU	82.56639364522486	3.0	1.0	1.0	1.0
+AGUUA	75.73957266183288	3.0	1.0	1.0	1.0
+AGUUC	72.26175803284734	3.0	1.0	1.0	1.0
+AGUUG	76.92624997148602	3.0	1.0	1.0	1.0
+AGUUU	72.14442795816693	3.0	1.0	1.0	1.0
+AUAAA	91.19504551542164	3.0	1.0	1.0	1.0
+AUAAC	84.112089074928	3.0	1.0	1.0	1.0
+AUAAG	92.18594090296568	3.0	1.0	1.0	1.0
+AUAAU	91.65320878106304	3.0	1.0	1.0	1.0
+AUACA	74.13286291573449	3.0	1.0	1.0	1.0
+AUACC	70.9711279141348	3.0	1.0	1.0	1.0
+AUACG	70.62722958295811	3.0	1.0	1.0	1.0
+AUACU	77.80049978430839	3.0	1.0	1.0	1.0
+AUAGA	107.26157302828793	3.0	1.0	1.0	1.0
+AUAGC	92.67066157229425	3.0	1.0	1.0	1.0
+AUAGG	98.50177669358607	3.0	1.0	1.0	1.0
+AUAGU	101.75292274536783	3.0	1.0	1.0	1.0
+AUAUA	81.88143846588814	3.0	1.0	1.0	1.0
+AUAUC	82.13703384268355	3.0	1.0	1.0	1.0
+AUAUG	74.19387723212975	3.0	1.0	1.0	1.0
+AUAUU	83.33074853576787	3.0	1.0	1.0	1.0
+AUCAA	76.46671419206696	3.0	1.0	1.0	1.0
+AUCAC	69.29917527232718	3.0	1.0	1.0	1.0
+AUCAG	83.48175228372718	3.0	1.0	1.0	1.0
+AUCAU	76.168460552955	3.0	1.0	1.0	1.0
+AUCCA	67.16484150283765	3.0	1.0	1.0	1.0
+AUCCC	61.488729780829836	3.0	1.0	1.0	1.0
+AUCCG	69.94617619394069	3.0	1.0	1.0	1.0
+AUCCU	65.9000013607538	3.0	1.0	1.0	1.0
+AUCGA	83.51358750537146	3.0	1.0	1.0	1.0
+AUCGC	76.63372480289642	3.0	1.0	1.0	1.0
+AUCGG	82.90287158221317	3.0	1.0	1.0	1.0
+AUCGU	79.69973171221524	3.0	1.0	1.0	1.0
+AUCUA	74.70910910059513	3.0	1.0	1.0	1.0
+AUCUC	70.35041435605532	3.0	1.0	1.0	1.0
+AUCUG	77.23889708457665	3.0	1.0	1.0	1.0
+AUCUU	71.07672485836207	3.0	1.0	1.0	1.0
+AUGAA	100.16737627622827	3.0	1.0	1.0	1.0
+AUGAC	102.01925595172668	3.0	1.0	1.0	1.0
+AUGAG	99.6576847110738	3.0	1.0	1.0	1.0
+AUGAU	105.68235449421366	3.0	1.0	1.0	1.0
+AUGCA	89.64224347924223	3.0	1.0	1.0	1.0
+AUGCC	87.32155371751709	3.0	1.0	1.0	1.0
+AUGCG	85.9659341402592	3.0	1.0	1.0	1.0
+AUGCU	92.2671555229435	3.0	1.0	1.0	1.0
+AUGGA	104.6032865165002	3.0	1.0	1.0	1.0
+AUGGC	93.10956255932223	3.0	1.0	1.0	1.0
+AUGGG	98.74362022726764	3.0	1.0	1.0	1.0
+AUGGU	101.582164778373	3.0	1.0	1.0	1.0
+AUGUA	95.83219663525095	3.0	1.0	1.0	1.0
+AUGUC	95.13565274511357	3.0	1.0	1.0	1.0
+AUGUG	82.8465198068614	3.0	1.0	1.0	1.0
+AUGUU	94.15001655206783	3.0	1.0	1.0	1.0
+AUUAA	80.37665859955627	3.0	1.0	1.0	1.0
+AUUAC	72.38267979968812	3.0	1.0	1.0	1.0
+AUUAG	86.14699448169739	3.0	1.0	1.0	1.0
+AUUAU	80.65019469215972	3.0	1.0	1.0	1.0
+AUUCA	70.69907695452707	3.0	1.0	1.0	1.0
+AUUCC	65.55854041867562	3.0	1.0	1.0	1.0
+AUUCG	73.0102000562794	3.0	1.0	1.0	1.0
+AUUCU	71.2423747268454	3.0	1.0	1.0	1.0
+AUUGA	90.1606956248493	3.0	1.0	1.0	1.0
+AUUGC	80.65019469215972	3.0	1.0	1.0	1.0
+AUUGG	89.54929976975045	3.0	1.0	1.0	1.0
+AUUGU	85.46993951415361	3.0	1.0	1.0	1.0
+AUUUA	74.32268515532284	3.0	1.0	1.0	1.0
+AUUUC	70.4778372912672	3.0	1.0	1.0	1.0
+AUUUG	76.64122812418454	3.0	1.0	1.0	1.0
+AUUUU	71.64455323982851	3.0	1.0	1.0	1.0
+CAAAA	94.58179898549498	3.0	1.0	1.0	1.0
+CAAAC	91.89613001565503	3.0	1.0	1.0	1.0
+CAAAG	94.85145155985197	3.0	1.0	1.0	1.0
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