purple-v2.32

Fix IndexOutOfBoundsException in clonality modelling

cobalt-v1.7

• Exit gracefully on exceptions
• Changed file names and headers for better consistency with other HMF tools

sv-linx-v1.2

DEV-759: refactor

sv-linx-v1.3: Linx:

- reportable fusions file context marked as 'Exon' since always reports the fused exon

purple-v2.31

Added microsatellite status
Added subclonal likelihood model and figure
Consistent file headers
Consistent file names
Fix whole genome duplication calculation
Changed definition of ref_genome parameter to be mandatory path to reference fasta file.
Added REP_S, REP_C, MH, TNC, KT fields to somatic vcf output
Added REF_G to structural vcf output
Added variant rainfall plot

patient-db-v3.24

load somatic variants no longer needs ref genome

health-checker-v3.1

Bug fix release to support WGSMetrics produced by most recent version of Picard tools

amber-v2.5

Fixed bug in contamination model if absolute zero contamination

patient-db-v3.21

Loads SVs to DB

amber-v2.4

• Added optional snp_bed parameter to output germline snps at specified locations
• Changed file names and headers for better consistency with other HMF tools