diff --git a/auth/pinned-requirements.txt b/auth/pinned-requirements.txt index 188c0e1d477..25349214333 100644 --- a/auth/pinned-requirements.txt +++ b/auth/pinned-requirements.txt @@ -37,7 +37,9 @@ idna==3.4 # -c hail/auth/../web_common/pinned-requirements.txt # requests oauthlib==3.2.2 - # via requests-oauthlib + # via + # -c hail/auth/../hail/python/pinned-requirements.txt + # requests-oauthlib pyasn1==0.5.0 # via # -c hail/auth/../gear/pinned-requirements.txt @@ -49,14 +51,16 @@ pyasn1-modules==0.3.0 # -c hail/auth/../gear/pinned-requirements.txt # -c hail/auth/../hail/python/pinned-requirements.txt # google-auth -requests==2.28.2 +requests==2.31.0 # via # -c hail/auth/../gear/pinned-requirements.txt # -c hail/auth/../hail/python/dev/pinned-requirements.txt # -c hail/auth/../hail/python/pinned-requirements.txt # requests-oauthlib requests-oauthlib==1.3.1 - # via google-auth-oauthlib + # via + # -c hail/auth/../hail/python/pinned-requirements.txt + # google-auth-oauthlib rsa==4.9 # via # -c hail/auth/../gear/pinned-requirements.txt diff --git a/batch/pinned-requirements.txt b/batch/pinned-requirements.txt index 6aa3a12599a..254831fce64 100644 --- a/batch/pinned-requirements.txt +++ b/batch/pinned-requirements.txt @@ -74,11 +74,11 @@ packaging==23.1 # -c hail/batch/../hail/python/dev/pinned-requirements.txt # -c hail/batch/../hail/python/pinned-requirements.txt # plotly -pandas==2.0.1 +pandas==2.0.2 # via # -c hail/batch/../hail/python/pinned-requirements.txt # -r hail/batch/requirements.txt -plotly==5.14.1 +plotly==5.15.0 # via # -c hail/batch/../hail/python/pinned-requirements.txt # -r hail/batch/requirements.txt diff --git a/ci/pinned-requirements.txt b/ci/pinned-requirements.txt index 80aee4ab0c6..04b64b43d22 100644 --- a/ci/pinned-requirements.txt +++ b/ci/pinned-requirements.txt @@ -26,13 +26,13 @@ click==8.1.3 # via # -c hail/ci/../hail/python/dev/pinned-requirements.txt # zulip -cryptography==40.0.2 +cryptography==41.0.0 # via # -c hail/ci/../hail/python/pinned-requirements.txt # pyjwt distro==1.8.0 # via zulip -gidgethub==5.2.1 +gidgethub==5.3.0 # via -r hail/ci/requirements.txt idna==3.4 # via @@ -52,7 +52,7 @@ pyjwt[crypto]==2.6.0 # via # -c hail/ci/../hail/python/pinned-requirements.txt # gidgethub -requests[security]==2.28.2 +requests[security]==2.31.0 # via # -c hail/ci/../gear/pinned-requirements.txt # -c hail/ci/../hail/python/dev/pinned-requirements.txt diff --git a/gear/pinned-requirements.txt b/gear/pinned-requirements.txt index 2fbe4d51a32..9e7770293b5 100644 --- a/gear/pinned-requirements.txt +++ b/gear/pinned-requirements.txt @@ -60,7 +60,7 @@ google-api-core==2.11.0 # -c hail/gear/../hail/python/hailtop/pinned-requirements.txt # -c hail/gear/../hail/python/pinned-requirements.txt # google-api-python-client -google-api-python-client==2.86.0 +google-api-python-client==2.88.0 # via google-cloud-profiler google-auth==2.17.3 # via @@ -107,7 +107,7 @@ orjson==3.8.10 # -r hail/gear/requirements.txt prometheus-async==19.2.0 # via -r hail/gear/requirements.txt -prometheus-client==0.16.0 +prometheus-client==0.17.0 # via # -c hail/gear/../hail/python/dev/pinned-requirements.txt # -r hail/gear/requirements.txt @@ -148,7 +148,7 @@ pyyaml==6.0 # -c hail/gear/../hail/python/dev/pinned-requirements.txt # -c hail/gear/../hail/python/pinned-requirements.txt # kubernetes-asyncio -requests==2.28.2 +requests==2.31.0 # via # -c hail/gear/../hail/python/dev/pinned-requirements.txt # -c hail/gear/../hail/python/hailtop/pinned-requirements.txt diff --git a/hail/python/dev/pinned-requirements.txt b/hail/python/dev/pinned-requirements.txt index 4651153fcec..85c6a2fabc5 100644 --- a/hail/python/dev/pinned-requirements.txt +++ b/hail/python/dev/pinned-requirements.txt @@ -6,7 +6,7 @@ # alabaster==0.7.13 # via sphinx -anyio==3.6.2 +anyio==3.7.0 # via jupyter-server argon2-cffi==21.3.0 # via @@ -81,12 +81,14 @@ docutils==0.18.1 # sphinx # sphinx-rtd-theme exceptiongroup==1.1.1 - # via pytest + # via + # anyio + # pytest execnet==1.9.0 # via pytest-xdist executing==1.2.0 # via stack-data -fastjsonschema==2.16.3 +fastjsonschema==2.17.1 # via nbformat fonttools==4.39.4 # via matplotlib @@ -181,7 +183,7 @@ jupyter-core==5.3.0 # qtconsole jupyter-events==0.6.3 # via jupyter-server -jupyter-server==2.5.0 +jupyter-server==2.6.0 # via # nbclassic # notebook-shim @@ -195,7 +197,7 @@ kiwisolver==1.4.4 # via matplotlib lazy-object-proxy==1.9.0 # via astroid -markupsafe==2.1.2 +markupsafe==2.1.3 # via # -c hail/hail/python/dev/../pinned-requirements.txt # jinja2 @@ -218,7 +220,7 @@ mypy-extensions==1.0.0 # mypy nbclassic==1.0.0 # via notebook -nbclient==0.7.4 +nbclient==0.8.0 # via nbconvert nbconvert==7.4.0 # via @@ -227,7 +229,7 @@ nbconvert==7.4.0 # nbclassic # nbsphinx # notebook -nbformat==5.8.0 +nbformat==5.9.0 # via # jupyter-server # nbclassic @@ -235,7 +237,7 @@ nbformat==5.8.0 # nbconvert # nbsphinx # notebook -nbsphinx==0.9.1 +nbsphinx==0.9.2 # via -r hail/hail/python/dev/requirements.txt nest-asyncio==1.5.6 # via @@ -252,6 +254,8 @@ numpy==1.24.3 # -c hail/hail/python/dev/../pinned-requirements.txt # contourpy # matplotlib +overrides==7.3.1 + # via jupyter-server packaging==23.1 # via # -c hail/hail/python/dev/../pinned-requirements.txt @@ -290,7 +294,7 @@ platformdirs==3.5.1 # pylint pluggy==1.0.0 # via pytest -prometheus-client==0.16.0 +prometheus-client==0.17.0 # via # jupyter-server # nbclassic @@ -345,7 +349,7 @@ pytest-html==1.22.1 # via -r hail/hail/python/dev/requirements.txt pytest-instafail==0.5.0 # via -r hail/hail/python/dev/requirements.txt -pytest-metadata==2.0.4 +pytest-metadata==3.0.0 # via pytest-html pytest-timeout==2.1.0 # via -r hail/hail/python/dev/requirements.txt @@ -370,7 +374,7 @@ pyyaml==6.0 # via # -c hail/hail/python/dev/../pinned-requirements.txt # jupyter-events -pyzmq==25.0.2 +pyzmq==25.1.0 # via # ipykernel # jupyter-client @@ -383,7 +387,7 @@ qtconsole==5.4.3 # via jupyter qtpy==2.3.1 # via qtconsole -requests==2.28.2 +requests==2.31.0 # via # -c hail/hail/python/dev/../pinned-requirements.txt # sphinx @@ -395,7 +399,7 @@ rfc3986-validator==0.1.1 # via # jsonschema # jupyter-events -ruff==0.0.267 +ruff==0.0.272 # via -r hail/hail/python/dev/requirements.txt send2trash==1.8.2 # via @@ -425,7 +429,7 @@ sphinx==6.2.1 # sphinxcontrib-katex sphinx-autodoc-typehints==1.23.0 # via -r hail/hail/python/dev/requirements.txt -sphinx-rtd-theme==1.2.0 +sphinx-rtd-theme==1.2.2 # via -r hail/hail/python/dev/requirements.txt sphinxcontrib-applehelp==1.0.4 # via sphinx @@ -437,7 +441,7 @@ sphinxcontrib-jquery==4.1 # via sphinx-rtd-theme sphinxcontrib-jsmath==1.0.1 # via sphinx -sphinxcontrib-katex==0.9.4 +sphinxcontrib-katex==0.9.5 # via -r hail/hail/python/dev/requirements.txt sphinxcontrib-qthelp==1.0.3 # via sphinx @@ -501,11 +505,11 @@ types-pymysql==1.0.19.7 # via -r hail/hail/python/dev/requirements.txt types-python-dateutil==2.8.19.13 # via -r hail/hail/python/dev/requirements.txt -types-pyyaml==6.0.12.9 +types-pyyaml==6.0.12.10 # via -r hail/hail/python/dev/requirements.txt -types-requests==2.30.0.0 +types-requests==2.31.0.1 # via -r hail/hail/python/dev/requirements.txt -types-setuptools==67.7.0.2 +types-setuptools==67.8.0.0 # via -r hail/hail/python/dev/requirements.txt types-six==1.16.21.8 # via -r hail/hail/python/dev/requirements.txt @@ -537,7 +541,7 @@ webencodings==0.5.1 # via # bleach # tinycss2 -websocket-client==1.5.1 +websocket-client==1.5.3 # via jupyter-server widgetsnbextension==4.0.7 # via ipywidgets diff --git a/hail/python/hailtop/pinned-requirements.txt b/hail/python/hailtop/pinned-requirements.txt index f9cc1e298b9..0e736200965 100644 --- a/hail/python/hailtop/pinned-requirements.txt +++ b/hail/python/hailtop/pinned-requirements.txt @@ -53,7 +53,7 @@ charset-normalizer==3.1.0 # requests commonmark==0.9.1 # via rich -cryptography==40.0.2 +cryptography==41.0.0 # via # azure-identity # azure-storage-blob @@ -145,7 +145,7 @@ python-dateutil==2.8.2 # via botocore python-json-logger==2.0.7 # via -r hail/hail/python/hailtop/requirements.txt -requests==2.28.2 +requests==2.31.0 # via # azure-core # google-api-core diff --git a/hail/python/pinned-requirements.txt b/hail/python/pinned-requirements.txt index d5294d48264..93e39cb98c6 100644 --- a/hail/python/pinned-requirements.txt +++ b/hail/python/pinned-requirements.txt @@ -29,7 +29,9 @@ attrs==23.1.0 avro==1.11.1 # via -r hail/hail/python/requirements.txt azure-common==1.1.28 - # via azure-mgmt-storage + # via + # -c hail/hail/python/hailtop/pinned-requirements.txt + # azure-mgmt-storage azure-core==1.26.4 # via # -c hail/hail/python/hailtop/pinned-requirements.txt @@ -42,14 +44,18 @@ azure-identity==1.12.0 # -c hail/hail/python/hailtop/pinned-requirements.txt # -r hail/hail/python/hailtop/requirements.txt azure-mgmt-core==1.4.0 - # via azure-mgmt-storage + # via + # -c hail/hail/python/hailtop/pinned-requirements.txt + # azure-mgmt-storage azure-mgmt-storage==20.1.0 - # via -r hail/hail/python/hailtop/requirements.txt + # via + # -c hail/hail/python/hailtop/pinned-requirements.txt + # -r hail/hail/python/hailtop/requirements.txt azure-storage-blob==12.16.0 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # -r hail/hail/python/hailtop/requirements.txt -bokeh==3.1.0 +bokeh==3.1.1 # via -r hail/hail/python/requirements.txt boto3==1.26.118 # via @@ -86,7 +92,7 @@ commonmark==0.9.1 # rich contourpy==1.0.7 # via bokeh -cryptography==40.0.2 +cryptography==41.0.0 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # azure-identity @@ -95,7 +101,7 @@ cryptography==40.0.2 # pyjwt decorator==4.4.2 # via -r hail/hail/python/requirements.txt -deprecated==1.2.13 +deprecated==1.2.14 # via -r hail/hail/python/requirements.txt dill==0.3.6 # via @@ -168,7 +174,7 @@ jmespath==1.0.1 # -c hail/hail/python/hailtop/pinned-requirements.txt # boto3 # botocore -markupsafe==2.1.2 +markupsafe==2.1.3 # via jinja2 msal==1.22.0 # via @@ -200,7 +206,9 @@ numpy==1.24.3 # pandas # scipy oauthlib==3.2.2 - # via requests-oauthlib + # via + # -c hail/hail/python/hailtop/pinned-requirements.txt + # requests-oauthlib orjson==3.8.10 # via # -c hail/hail/python/hailtop/pinned-requirements.txt @@ -209,7 +217,7 @@ packaging==23.1 # via # bokeh # plotly -pandas==2.0.1 +pandas==2.0.2 # via # -r hail/hail/python/requirements.txt # bokeh @@ -217,7 +225,7 @@ parsimonious==0.10.0 # via -r hail/hail/python/requirements.txt pillow==9.5.0 # via bokeh -plotly==5.14.1 +plotly==5.15.0 # via -r hail/hail/python/requirements.txt portalocker==2.7.0 # via @@ -272,9 +280,9 @@ pytz==2023.3 # via pandas pyyaml==6.0 # via bokeh -regex==2023.5.5 +regex==2023.6.3 # via parsimonious -requests==2.28.2 +requests==2.31.0 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # -r hail/hail/python/requirements.txt @@ -342,7 +350,7 @@ uvloop==0.17.0 ; sys_platform != "win32" # -r hail/hail/python/hailtop/requirements.txt wrapt==1.15.0 # via deprecated -xyzservices==2023.2.0 +xyzservices==2023.5.0 # via bokeh yarl==1.9.1 # via diff --git a/web_common/pinned-requirements.txt b/web_common/pinned-requirements.txt index 870f311854e..0ab05ff10f2 100644 --- a/web_common/pinned-requirements.txt +++ b/web_common/pinned-requirements.txt @@ -53,7 +53,7 @@ jinja2==3.1.2 # aiohttp-jinja2 libsass==0.22.0 # via -r hail/web_common/requirements.txt -markupsafe==2.1.2 +markupsafe==2.1.3 # via # -c hail/web_common/../hail/python/dev/pinned-requirements.txt # -c hail/web_common/../hail/python/pinned-requirements.txt