From e5a50f592d86659f4fbcc4e6ed500769fd574fc8 Mon Sep 17 00:00:00 2001 From: Chris Vittal Date: Mon, 20 Mar 2023 16:52:22 -0400 Subject: [PATCH] xfails --- hail/python/test/hail/methods/test_statgen.py | 7 ------- 1 file changed, 7 deletions(-) diff --git a/hail/python/test/hail/methods/test_statgen.py b/hail/python/test/hail/methods/test_statgen.py index 52ba60781b9a..c7b7892e232b 100644 --- a/hail/python/test/hail/methods/test_statgen.py +++ b/hail/python/test/hail/methods/test_statgen.py @@ -1440,7 +1440,6 @@ def test_issue_4527(self): self.assertEqual(1, mt._force_count_rows()) @fails_service_backend() - @fails_local_backend() def test_ld_prune(self): r2_threshold = 0.001 window_size = 5 @@ -1485,7 +1484,6 @@ def test_ld_prune_inputs(self): self.assertRaises(ValueError, lambda: hl.ld_prune(ds.GT, r2=2.0)) @fails_service_backend() - @fails_local_backend() def test_ld_prune_no_prune(self): ds = hl.balding_nichols_model(n_populations=1, n_samples=10, n_variants=10, n_partitions=3) pruned_table = hl.ld_prune(ds.GT, r2=0.0, bp_window_size=0) @@ -1493,14 +1491,12 @@ def test_ld_prune_no_prune(self): self.assertEqual(pruned_table.count(), expected_count) @fails_service_backend() - @fails_local_backend() def test_ld_prune_identical_variants(self): ds = hl.import_vcf(resource('ldprune2.vcf'), min_partitions=2) pruned_table = hl.ld_prune(ds.GT) self.assertEqual(pruned_table.count(), 1) @fails_service_backend() - @fails_local_backend() def test_ld_prune_maf(self): ds = hl.balding_nichols_model(n_populations=1, n_samples=50, n_variants=10, n_partitions=10).cache() @@ -1516,7 +1512,6 @@ def test_ld_prune_maf(self): self.assertEqual(kept_maf, max(ht.maf.collect())) @fails_service_backend() - @fails_local_backend() def test_ld_prune_call_expression(self): ds = hl.import_vcf(resource("ldprune2.vcf"), min_partitions=2) ds = ds.select_entries(foo=ds.GT) @@ -1524,7 +1519,6 @@ def test_ld_prune_call_expression(self): self.assertEqual(pruned_table.count(), 1) @fails_service_backend() - @fails_local_backend() def test_ld_prune_missing_entries(self): mt = hl.import_vcf(resource("ldprune2.vcf"), min_partitions=2).add_col_index() mt = mt.filter_entries(mt.col_idx > 1) @@ -1532,7 +1526,6 @@ def test_ld_prune_missing_entries(self): assert result.count() > 0 @fails_service_backend() - @fails_local_backend() def test_ld_prune_with_duplicate_row_keys(self): ds = hl.import_vcf(resource('ldprune2.vcf'), min_partitions=2) ds_duplicate = ds.annotate_rows(duplicate=[1, 2]).explode_rows('duplicate')