diff --git a/batch/pinned-requirements.txt b/batch/pinned-requirements.txt index 68829fd3d2c..11a6bc56971 100644 --- a/batch/pinned-requirements.txt +++ b/batch/pinned-requirements.txt @@ -34,7 +34,7 @@ attrs==23.1.0 # -c hail/batch/../hail/python/pinned-requirements.txt # -c hail/batch/../web_common/pinned-requirements.txt # aiohttp -charset-normalizer==3.2.0 +charset-normalizer==3.3.0 # via # -c hail/batch/../gear/pinned-requirements.txt # -c hail/batch/../hail/python/dev/pinned-requirements.txt @@ -69,7 +69,7 @@ numpy==1.26.0 # -c hail/batch/../hail/python/dev/pinned-requirements.txt # -c hail/batch/../hail/python/pinned-requirements.txt # pandas -packaging==23.1 +packaging==23.2 # via # -c hail/batch/../hail/python/dev/pinned-requirements.txt # -c hail/batch/../hail/python/pinned-requirements.txt diff --git a/ci/pinned-requirements.txt b/ci/pinned-requirements.txt index 74bf754507e..3b7436d2813 100644 --- a/ci/pinned-requirements.txt +++ b/ci/pinned-requirements.txt @@ -10,12 +10,12 @@ certifi==2023.7.22 # -c hail/ci/../hail/python/dev/pinned-requirements.txt # -c hail/ci/../hail/python/pinned-requirements.txt # requests -cffi==1.15.1 +cffi==1.16.0 # via # -c hail/ci/../hail/python/dev/pinned-requirements.txt # -c hail/ci/../hail/python/pinned-requirements.txt # cryptography -charset-normalizer==3.2.0 +charset-normalizer==3.3.0 # via # -c hail/ci/../gear/pinned-requirements.txt # -c hail/ci/../hail/python/dev/pinned-requirements.txt @@ -71,7 +71,7 @@ uritemplate==4.1.1 # via # -c hail/ci/../gear/pinned-requirements.txt # gidgethub -urllib3==1.26.16 +urllib3==1.26.17 # via # -c hail/ci/../gear/pinned-requirements.txt # -c hail/ci/../hail/python/dev/pinned-requirements.txt diff --git a/gear/pinned-requirements.txt b/gear/pinned-requirements.txt index 21ed165739a..6e503735561 100644 --- a/gear/pinned-requirements.txt +++ b/gear/pinned-requirements.txt @@ -50,7 +50,7 @@ certifi==2023.7.22 # -c hail/gear/../hail/python/pinned-requirements.txt # kubernetes-asyncio # requests -charset-normalizer==3.2.0 +charset-normalizer==3.3.0 # via # -c hail/gear/../hail/python/dev/pinned-requirements.txt # -c hail/gear/../hail/python/hailtop/pinned-requirements.txt @@ -71,9 +71,9 @@ frozenlist==1.4.0 # aiosignal google-api-core==2.12.0 # via google-api-python-client -google-api-python-client==2.101.0 +google-api-python-client==2.102.0 # via google-cloud-profiler -google-auth==2.23.0 +google-auth==2.23.2 # via # -c hail/gear/../hail/python/hailtop/pinned-requirements.txt # -c hail/gear/../hail/python/pinned-requirements.txt @@ -213,15 +213,14 @@ typing-extensions==4.8.0 # janus uritemplate==4.1.1 # via google-api-python-client -urllib3==1.26.16 +urllib3==1.26.17 # via # -c hail/gear/../hail/python/dev/pinned-requirements.txt # -c hail/gear/../hail/python/hailtop/pinned-requirements.txt # -c hail/gear/../hail/python/pinned-requirements.txt - # google-auth # kubernetes-asyncio # requests -wcwidth==0.2.6 +wcwidth==0.2.8 # via # -c hail/gear/../hail/python/dev/pinned-requirements.txt # prompt-toolkit diff --git a/hail/python/dev/pinned-requirements.txt b/hail/python/dev/pinned-requirements.txt index 3e2939b288f..d2ed4d8fe71 100644 --- a/hail/python/dev/pinned-requirements.txt +++ b/hail/python/dev/pinned-requirements.txt @@ -12,7 +12,7 @@ argon2-cffi==23.1.0 # via jupyter-server argon2-cffi-bindings==21.2.0 # via argon2-cffi -arrow==1.2.3 +arrow==1.3.0 # via isoduration astroid==2.15.8 # via pylint @@ -26,7 +26,7 @@ attrs==23.1.0 # curlylint # jsonschema # referencing -babel==2.12.1 +babel==2.13.0 # via # jupyterlab-server # sphinx @@ -42,13 +42,13 @@ certifi==2023.7.22 # via # -c hail/hail/python/dev/../pinned-requirements.txt # requests -cffi==1.15.1 +cffi==1.16.0 # via # -c hail/hail/python/dev/../pinned-requirements.txt # argon2-cffi-bindings cfgv==3.4.0 # via pre-commit -charset-normalizer==3.2.0 +charset-normalizer==3.3.0 # via # -c hail/hail/python/dev/../pinned-requirements.txt # requests @@ -68,7 +68,7 @@ contourpy==1.1.1 # matplotlib curlylint==0.13.1 # via -r hail/hail/python/dev/requirements.txt -cycler==0.11.0 +cycler==0.12.0 # via matplotlib debugpy==1.8.0 # via ipykernel @@ -96,19 +96,19 @@ exceptiongroup==1.1.3 # pytest execnet==2.0.2 # via pytest-xdist -executing==1.2.0 +executing==2.0.0 # via stack-data -fastjsonschema==2.18.0 +fastjsonschema==2.18.1 # via nbformat filelock==3.12.4 # via virtualenv -fonttools==4.42.1 +fonttools==4.43.0 # via matplotlib fqdn==1.5.1 # via jsonschema fswatch==0.1.1 # via -r hail/hail/python/dev/requirements.txt -identify==2.5.29 +identify==2.5.30 # via pre-commit idna==3.4 # via @@ -136,7 +136,7 @@ ipykernel==6.25.2 # jupyter-console # jupyterlab # qtconsole -ipython==8.15.0 +ipython==8.16.1 # via # ipykernel # ipywidgets @@ -149,7 +149,7 @@ isoduration==20.11.0 # via jsonschema isort==5.12.0 # via pylint -jedi==0.19.0 +jedi==0.19.1 # via ipython jinja2==3.1.2 # via @@ -182,7 +182,7 @@ jupyter-client==8.3.1 # qtconsole jupyter-console==6.6.3 # via jupyter -jupyter-core==5.3.1 +jupyter-core==5.3.2 # via # ipykernel # jupyter-client @@ -233,13 +233,13 @@ matplotlib-inline==0.1.6 # ipython mccabe==0.7.0 # via pylint -mistune==3.0.1 +mistune==3.0.2 # via nbconvert mypy-extensions==1.0.0 # via black nbclient==0.8.0 # via nbconvert -nbconvert==7.8.0 +nbconvert==7.9.2 # via # jupyter # jupyter-server @@ -273,7 +273,7 @@ numpy==1.26.0 # matplotlib overrides==7.4.0 # via jupyter-server -packaging==23.1 +packaging==23.2 # via # -c hail/hail/python/dev/../pinned-requirements.txt # ipykernel @@ -303,8 +303,9 @@ pickleshare==0.7.5 pillow==10.0.1 # via # -c hail/hail/python/dev/../pinned-requirements.txt + # -r hail/hail/python/dev/requirements.txt # matplotlib -platformdirs==3.10.0 +platformdirs==3.11.0 # via # black # jupyter-core @@ -342,11 +343,11 @@ pygments==2.16.1 # nbconvert # qtconsole # sphinx -pylint==2.17.6 +pylint==2.17.7 # via -r hail/hail/python/dev/requirements.txt pyparsing==3.1.1 # via matplotlib -pyright==1.1.327 +pyright==1.1.329 # via -r hail/hail/python/dev/requirements.txt pytest==7.4.2 # via @@ -377,6 +378,7 @@ pytest-xdist==2.5.0 python-dateutil==2.8.2 # via # -c hail/hail/python/dev/../pinned-requirements.txt + # arrow # jupyter-client # matplotlib python-json-logger==2.0.7 @@ -417,11 +419,11 @@ rfc3986-validator==0.1.1 # via # jsonschema # jupyter-events -rpds-py==0.10.3 +rpds-py==0.10.4 # via # jsonschema # referencing -ruff==0.0.291 +ruff==0.0.292 # via -r hail/hail/python/dev/requirements.txt send2trash==1.8.2 # via jupyter-server @@ -471,7 +473,7 @@ sphinxcontrib-qthelp==1.0.6 # via sphinx sphinxcontrib-serializinghtml==1.1.9 # via sphinx -stack-data==0.6.2 +stack-data==0.6.3 # via ipython terminado==0.17.1 # via @@ -498,7 +500,7 @@ tornado==6.3.3 # jupyterlab # notebook # terminado -traitlets==5.10.1 +traitlets==5.11.2 # via # comm # ipykernel @@ -525,10 +527,12 @@ types-deprecated==1.2.9.3 types-pymysql==1.1.0.1 # via -r hail/hail/python/dev/requirements.txt types-python-dateutil==2.8.19.14 - # via -r hail/hail/python/dev/requirements.txt + # via + # -r hail/hail/python/dev/requirements.txt + # arrow types-pyyaml==6.0.12.12 # via -r hail/hail/python/dev/requirements.txt -types-requests==2.31.0.5 +types-requests==2.31.0.6 # via -r hail/hail/python/dev/requirements.txt types-setuptools==68.2.0.0 # via -r hail/hail/python/dev/requirements.txt @@ -550,13 +554,13 @@ typing-extensions==4.8.0 # pylint uri-template==1.3.0 # via jsonschema -urllib3==1.26.16 +urllib3==1.26.17 # via # -c hail/hail/python/dev/../pinned-requirements.txt # requests virtualenv==20.24.5 # via pre-commit -wcwidth==0.2.6 +wcwidth==0.2.8 # via prompt-toolkit webcolors==1.13 # via jsonschema diff --git a/hail/python/dev/requirements.txt b/hail/python/dev/requirements.txt index b9c0ad39a39..568f555f856 100644 --- a/hail/python/dev/requirements.txt +++ b/hail/python/dev/requirements.txt @@ -30,7 +30,8 @@ types-PyYAML types-chardet types-decorator types-python-dateutil -types-requests +# https://github.com/python/typeshed/blob/main/stubs/requests/METADATA.toml#L5-L10 +types-requests<2.31.0.7 types-setuptools types-six types-tabulate diff --git a/hail/python/hailtop/pinned-requirements.txt b/hail/python/hailtop/pinned-requirements.txt index 4da6817fbdc..014c25b01ff 100644 --- a/hail/python/hailtop/pinned-requirements.txt +++ b/hail/python/hailtop/pinned-requirements.txt @@ -30,9 +30,9 @@ azure-mgmt-storage==20.1.0 # via -r hail/hail/python/hailtop/requirements.txt azure-storage-blob==12.18.2 # via -r hail/hail/python/hailtop/requirements.txt -boto3==1.28.54 +boto3==1.28.61 # via -r hail/hail/python/hailtop/requirements.txt -botocore==1.31.54 +botocore==1.31.61 # via # -r hail/hail/python/hailtop/requirements.txt # boto3 @@ -43,11 +43,11 @@ certifi==2023.7.22 # via # msrest # requests -cffi==1.15.1 +cffi==1.16.0 # via # cryptography # pycares -charset-normalizer==3.2.0 +charset-normalizer==3.3.0 # via # aiohttp # requests @@ -68,7 +68,7 @@ frozenlist==1.4.0 # -r hail/hail/python/hailtop/requirements.txt # aiohttp # aiosignal -google-auth==2.23.0 +google-auth==2.23.2 # via # -r hail/hail/python/hailtop/requirements.txt # google-auth-oauthlib @@ -92,7 +92,7 @@ jmespath==1.0.1 # botocore jproperties==2.1.1 # via -r hail/hail/python/hailtop/requirements.txt -msal==1.24.0 +msal==1.24.1 # via # azure-identity # msal-extensions @@ -148,7 +148,7 @@ rich==12.6.0 # via -r hail/hail/python/hailtop/requirements.txt rsa==4.9 # via google-auth -s3transfer==0.6.2 +s3transfer==0.7.0 # via boto3 six==1.16.0 # via @@ -168,10 +168,9 @@ typing-extensions==4.8.0 # azure-storage-blob # janus # typer -urllib3==1.26.16 +urllib3==1.26.17 # via # botocore - # google-auth # requests uvloop==0.17.0 ; sys_platform != "win32" # via -r hail/hail/python/hailtop/requirements.txt diff --git a/hail/python/pinned-requirements.txt b/hail/python/pinned-requirements.txt index 9b9928e0883..f09ac68fd77 100644 --- a/hail/python/pinned-requirements.txt +++ b/hail/python/pinned-requirements.txt @@ -57,11 +57,11 @@ azure-storage-blob==12.18.2 # -r hail/hail/python/hailtop/requirements.txt bokeh==3.2.2 # via -r hail/hail/python/requirements.txt -boto3==1.28.54 +boto3==1.28.61 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # -r hail/hail/python/hailtop/requirements.txt -botocore==1.31.54 +botocore==1.31.61 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # -r hail/hail/python/hailtop/requirements.txt @@ -76,12 +76,12 @@ certifi==2023.7.22 # -c hail/hail/python/hailtop/pinned-requirements.txt # msrest # requests -cffi==1.15.1 +cffi==1.16.0 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # cryptography # pycares -charset-normalizer==3.2.0 +charset-normalizer==3.3.0 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # aiohttp @@ -118,7 +118,7 @@ frozenlist==1.4.0 # -r hail/hail/python/requirements.txt # aiohttp # aiosignal -google-auth==2.23.0 +google-auth==2.23.2 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # -r hail/hail/python/hailtop/requirements.txt @@ -158,7 +158,7 @@ jproperties==2.1.1 # -r hail/hail/python/hailtop/requirements.txt markupsafe==2.1.3 # via jinja2 -msal==1.24.0 +msal==1.24.1 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # azure-identity @@ -195,7 +195,7 @@ orjson==3.9.7 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # -r hail/hail/python/hailtop/requirements.txt -packaging==23.1 +packaging==23.2 # via # bokeh # plotly @@ -263,7 +263,7 @@ pyyaml==6.0.1 # -c hail/hail/python/hailtop/pinned-requirements.txt # -r hail/hail/python/hailtop/requirements.txt # bokeh -regex==2023.8.8 +regex==2023.10.3 # via parsimonious requests==2.31.0 # via @@ -286,11 +286,11 @@ rsa==4.9 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # google-auth -s3transfer==0.6.2 +s3transfer==0.7.0 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # boto3 -scipy==1.11.2 +scipy==1.11.3 # via -r hail/hail/python/requirements.txt six==1.16.0 # via @@ -324,11 +324,10 @@ typing-extensions==4.8.0 # typer tzdata==2023.3 # via pandas -urllib3==1.26.16 +urllib3==1.26.17 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # botocore - # google-auth # requests uvloop==0.17.0 ; sys_platform != "win32" # via @@ -336,7 +335,7 @@ uvloop==0.17.0 ; sys_platform != "win32" # -r hail/hail/python/hailtop/requirements.txt wrapt==1.15.0 # via deprecated -xyzservices==2023.7.0 +xyzservices==2023.10.0 # via bokeh yarl==1.9.2 # via diff --git a/web_common/pinned-requirements.txt b/web_common/pinned-requirements.txt index c09fd93d02c..95272285f70 100644 --- a/web_common/pinned-requirements.txt +++ b/web_common/pinned-requirements.txt @@ -27,7 +27,7 @@ attrs==23.1.0 # -c hail/web_common/../hail/python/dev/pinned-requirements.txt # -c hail/web_common/../hail/python/pinned-requirements.txt # aiohttp -charset-normalizer==3.2.0 +charset-normalizer==3.3.0 # via # -c hail/web_common/../gear/pinned-requirements.txt # -c hail/web_common/../hail/python/dev/pinned-requirements.txt