From a3c10b1a0755dc5732010328f98f750324dc5466 Mon Sep 17 00:00:00 2001 From: Chris Vittal Date: Mon, 20 Mar 2023 11:16:37 -0400 Subject: [PATCH] fix --- hail/python/test/hail/methods/relatedness/test_pc_relate.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/hail/python/test/hail/methods/relatedness/test_pc_relate.py b/hail/python/test/hail/methods/relatedness/test_pc_relate.py index 990685c8efb4..5ab3329f8fb7 100644 --- a/hail/python/test/hail/methods/relatedness/test_pc_relate.py +++ b/hail/python/test/hail/methods/relatedness/test_pc_relate.py @@ -95,8 +95,10 @@ def test_pc_relate_issue_5263(): assert expected._same(actual, tolerance=1e-3) +@fails_service_backend() +@fails_local_backend() def test_pca_pc_relate_with_empty_partitions(): mt = hl.read_matrix_table(resource('pc-releate-with-empty-partitions.mt')) _, scores_ht, _ = hl.hwe_normalized_pca(mt.GT, k=6, compute_loadings=False) relatedness_ht = hl.pc_relate(mt.GT, min_individual_maf=0.01, scores_expr=scores_ht[mt.col_key].scores, block_size=4096, min_kinship=0.05) - assert relatedness_ht._force_count() == 13 # know expected value + assert relatedness_ht._force_count() == 13 # known expected value