diff --git a/auth/pinned-requirements.txt b/auth/pinned-requirements.txt index 188c0e1d477f..370a5961b4d3 100644 --- a/auth/pinned-requirements.txt +++ b/auth/pinned-requirements.txt @@ -4,73 +4,3 @@ # # pip-compile --output-file=hail/auth/pinned-requirements.txt hail/auth/requirements.txt # -cachetools==5.3.0 - # via - # -c hail/auth/../gear/pinned-requirements.txt - # -c hail/auth/../hail/python/pinned-requirements.txt - # google-auth -certifi==2022.12.7 - # via - # -c hail/auth/../gear/pinned-requirements.txt - # -c hail/auth/../hail/python/dev/pinned-requirements.txt - # -c hail/auth/../hail/python/pinned-requirements.txt - # requests -charset-normalizer==3.1.0 - # via - # -c hail/auth/../gear/pinned-requirements.txt - # -c hail/auth/../hail/python/dev/pinned-requirements.txt - # -c hail/auth/../hail/python/pinned-requirements.txt - # -c hail/auth/../web_common/pinned-requirements.txt - # requests -google-auth==2.17.3 - # via - # -c hail/auth/../gear/pinned-requirements.txt - # -c hail/auth/../hail/python/pinned-requirements.txt - # google-auth-oauthlib -google-auth-oauthlib==0.8.0 - # via -r hail/auth/requirements.txt -idna==3.4 - # via - # -c hail/auth/../gear/pinned-requirements.txt - # -c hail/auth/../hail/python/dev/pinned-requirements.txt - # -c hail/auth/../hail/python/pinned-requirements.txt - # -c hail/auth/../web_common/pinned-requirements.txt - # requests -oauthlib==3.2.2 - # via requests-oauthlib -pyasn1==0.5.0 - # via - # -c hail/auth/../gear/pinned-requirements.txt - # -c hail/auth/../hail/python/pinned-requirements.txt - # pyasn1-modules - # rsa -pyasn1-modules==0.3.0 - # via - # -c hail/auth/../gear/pinned-requirements.txt - # -c hail/auth/../hail/python/pinned-requirements.txt - # google-auth -requests==2.28.2 - # via - # -c hail/auth/../gear/pinned-requirements.txt - # -c hail/auth/../hail/python/dev/pinned-requirements.txt - # -c hail/auth/../hail/python/pinned-requirements.txt - # requests-oauthlib -requests-oauthlib==1.3.1 - # via google-auth-oauthlib -rsa==4.9 - # via - # -c hail/auth/../gear/pinned-requirements.txt - # -c hail/auth/../hail/python/pinned-requirements.txt - # google-auth -six==1.16.0 - # via - # -c hail/auth/../gear/pinned-requirements.txt - # -c hail/auth/../hail/python/dev/pinned-requirements.txt - # -c hail/auth/../hail/python/pinned-requirements.txt - # google-auth -urllib3==1.26.15 - # via - # -c hail/auth/../gear/pinned-requirements.txt - # -c hail/auth/../hail/python/dev/pinned-requirements.txt - # -c hail/auth/../hail/python/pinned-requirements.txt - # requests diff --git a/auth/requirements.txt b/auth/requirements.txt index f9a32c9b6313..64f46f9bbb88 100644 --- a/auth/requirements.txt +++ b/auth/requirements.txt @@ -2,4 +2,3 @@ -c ../hail/python/dev/pinned-requirements.txt -c ../gear/pinned-requirements.txt -c ../web_common/pinned-requirements.txt -google-auth-oauthlib>=0.5.2,<1 diff --git a/batch/pinned-requirements.txt b/batch/pinned-requirements.txt index 6aa3a12599ac..837eb4c260dd 100644 --- a/batch/pinned-requirements.txt +++ b/batch/pinned-requirements.txt @@ -103,7 +103,7 @@ tenacity==8.2.2 # via # -c hail/batch/../hail/python/pinned-requirements.txt # plotly -typing-extensions==4.5.0 +typing-extensions==4.6.2 # via # -c hail/batch/../hail/python/dev/pinned-requirements.txt # -c hail/batch/../hail/python/pinned-requirements.txt @@ -112,7 +112,7 @@ tzdata==2023.3 # via # -c hail/batch/../hail/python/pinned-requirements.txt # pandas -yarl==1.9.1 +yarl==1.9.2 # via # -c hail/batch/../gear/pinned-requirements.txt # -c hail/batch/../hail/python/pinned-requirements.txt diff --git a/ci/pinned-requirements.txt b/ci/pinned-requirements.txt index 80aee4ab0c66..0de39b6def61 100644 --- a/ci/pinned-requirements.txt +++ b/ci/pinned-requirements.txt @@ -4,7 +4,7 @@ # # pip-compile --output-file=hail/ci/pinned-requirements.txt hail/ci/requirements.txt # -certifi==2022.12.7 +certifi==2023.5.7 # via # -c hail/ci/../gear/pinned-requirements.txt # -c hail/ci/../hail/python/dev/pinned-requirements.txt @@ -48,18 +48,18 @@ pycparser==2.21 # -c hail/ci/../hail/python/dev/pinned-requirements.txt # -c hail/ci/../hail/python/pinned-requirements.txt # cffi -pyjwt[crypto]==2.6.0 +pyjwt[crypto]==2.7.0 # via # -c hail/ci/../hail/python/pinned-requirements.txt # gidgethub -requests[security]==2.28.2 +requests[security]==2.31.0 # via # -c hail/ci/../gear/pinned-requirements.txt # -c hail/ci/../hail/python/dev/pinned-requirements.txt # -c hail/ci/../hail/python/pinned-requirements.txt # matrix-client # zulip -typing-extensions==4.5.0 +typing-extensions==4.6.2 # via # -c hail/ci/../hail/python/dev/pinned-requirements.txt # -c hail/ci/../hail/python/pinned-requirements.txt @@ -68,7 +68,7 @@ uritemplate==4.1.1 # via # -c hail/ci/../gear/pinned-requirements.txt # gidgethub -urllib3==1.26.15 +urllib3==1.26.16 # via # -c hail/ci/../gear/pinned-requirements.txt # -c hail/ci/../hail/python/dev/pinned-requirements.txt diff --git a/gear/pinned-requirements.txt b/gear/pinned-requirements.txt index 2fbe4d51a322..f1bb71aff84a 100644 --- a/gear/pinned-requirements.txt +++ b/gear/pinned-requirements.txt @@ -35,7 +35,7 @@ cachetools==5.3.0 # -c hail/gear/../hail/python/hailtop/pinned-requirements.txt # -c hail/gear/../hail/python/pinned-requirements.txt # google-auth -certifi==2022.12.7 +certifi==2023.5.7 # via # -c hail/gear/../hail/python/dev/pinned-requirements.txt # -c hail/gear/../hail/python/hailtop/pinned-requirements.txt @@ -60,9 +60,9 @@ google-api-core==2.11.0 # -c hail/gear/../hail/python/hailtop/pinned-requirements.txt # -c hail/gear/../hail/python/pinned-requirements.txt # google-api-python-client -google-api-python-client==2.86.0 +google-api-python-client==2.87.0 # via google-cloud-profiler -google-auth==2.17.3 +google-auth==2.18.1 # via # -c hail/gear/../hail/python/hailtop/pinned-requirements.txt # -c hail/gear/../hail/python/pinned-requirements.txt @@ -100,14 +100,14 @@ multidict==6.0.4 # -c hail/gear/../hail/python/pinned-requirements.txt # aiohttp # yarl -orjson==3.8.10 +orjson==3.8.13 # via # -c hail/gear/../hail/python/hailtop/pinned-requirements.txt # -c hail/gear/../hail/python/pinned-requirements.txt # -r hail/gear/requirements.txt prometheus-async==19.2.0 # via -r hail/gear/requirements.txt -prometheus-client==0.16.0 +prometheus-client==0.17.0 # via # -c hail/gear/../hail/python/dev/pinned-requirements.txt # -r hail/gear/requirements.txt @@ -148,7 +148,7 @@ pyyaml==6.0 # -c hail/gear/../hail/python/dev/pinned-requirements.txt # -c hail/gear/../hail/python/pinned-requirements.txt # kubernetes-asyncio -requests==2.28.2 +requests==2.31.0 # via # -c hail/gear/../hail/python/dev/pinned-requirements.txt # -c hail/gear/../hail/python/hailtop/pinned-requirements.txt @@ -176,11 +176,12 @@ sortedcontainers==2.4.0 # -r hail/gear/requirements.txt uritemplate==4.1.1 # via google-api-python-client -urllib3==1.26.15 +urllib3==1.26.16 # via # -c hail/gear/../hail/python/dev/pinned-requirements.txt # -c hail/gear/../hail/python/hailtop/pinned-requirements.txt # -c hail/gear/../hail/python/pinned-requirements.txt + # google-auth # kubernetes-asyncio # requests wrapt==1.15.0 @@ -188,7 +189,7 @@ wrapt==1.15.0 # -c hail/gear/../hail/python/dev/pinned-requirements.txt # -c hail/gear/../hail/python/pinned-requirements.txt # prometheus-async -yarl==1.9.1 +yarl==1.9.2 # via # -c hail/gear/../hail/python/hailtop/pinned-requirements.txt # -c hail/gear/../hail/python/pinned-requirements.txt diff --git a/hail/python/dev/pinned-requirements.txt b/hail/python/dev/pinned-requirements.txt index 4651153fcec6..a0e5d63bda54 100644 --- a/hail/python/dev/pinned-requirements.txt +++ b/hail/python/dev/pinned-requirements.txt @@ -36,7 +36,7 @@ black==22.12.0 # via -r hail/hail/python/dev/requirements.txt bleach==6.0.0 # via nbconvert -certifi==2022.12.7 +certifi==2023.5.7 # via # -c hail/hail/python/dev/../pinned-requirements.txt # requests @@ -86,7 +86,7 @@ execnet==1.9.0 # via pytest-xdist executing==1.2.0 # via stack-data -fastjsonschema==2.16.3 +fastjsonschema==2.17.1 # via nbformat fonttools==4.39.4 # via matplotlib @@ -181,7 +181,7 @@ jupyter-core==5.3.0 # qtconsole jupyter-events==0.6.3 # via jupyter-server -jupyter-server==2.5.0 +jupyter-server==2.6.0 # via # nbclassic # notebook-shim @@ -218,7 +218,7 @@ mypy-extensions==1.0.0 # mypy nbclassic==1.0.0 # via notebook -nbclient==0.7.4 +nbclient==0.8.0 # via nbconvert nbconvert==7.4.0 # via @@ -235,7 +235,7 @@ nbformat==5.8.0 # nbconvert # nbsphinx # notebook -nbsphinx==0.9.1 +nbsphinx==0.9.2 # via -r hail/hail/python/dev/requirements.txt nest-asyncio==1.5.6 # via @@ -252,6 +252,8 @@ numpy==1.24.3 # -c hail/hail/python/dev/../pinned-requirements.txt # contourpy # matplotlib +overrides==7.3.1 + # via jupyter-server packaging==23.1 # via # -c hail/hail/python/dev/../pinned-requirements.txt @@ -290,7 +292,7 @@ platformdirs==3.5.1 # pylint pluggy==1.0.0 # via pytest -prometheus-client==0.16.0 +prometheus-client==0.17.0 # via # jupyter-server # nbclassic @@ -383,7 +385,7 @@ qtconsole==5.4.3 # via jupyter qtpy==2.3.1 # via qtconsole -requests==2.28.2 +requests==2.31.0 # via # -c hail/hail/python/dev/../pinned-requirements.txt # sphinx @@ -395,7 +397,7 @@ rfc3986-validator==0.1.1 # via # jsonschema # jupyter-events -ruff==0.0.267 +ruff==0.0.270 # via -r hail/hail/python/dev/requirements.txt send2trash==1.8.2 # via @@ -425,7 +427,7 @@ sphinx==6.2.1 # sphinxcontrib-katex sphinx-autodoc-typehints==1.23.0 # via -r hail/hail/python/dev/requirements.txt -sphinx-rtd-theme==1.2.0 +sphinx-rtd-theme==1.2.1 # via -r hail/hail/python/dev/requirements.txt sphinxcontrib-applehelp==1.0.4 # via sphinx @@ -501,11 +503,11 @@ types-pymysql==1.0.19.7 # via -r hail/hail/python/dev/requirements.txt types-python-dateutil==2.8.19.13 # via -r hail/hail/python/dev/requirements.txt -types-pyyaml==6.0.12.9 +types-pyyaml==6.0.12.10 # via -r hail/hail/python/dev/requirements.txt -types-requests==2.30.0.0 +types-requests==2.31.0.0 # via -r hail/hail/python/dev/requirements.txt -types-setuptools==67.7.0.2 +types-setuptools==67.8.0.0 # via -r hail/hail/python/dev/requirements.txt types-six==1.16.21.8 # via -r hail/hail/python/dev/requirements.txt @@ -515,7 +517,7 @@ types-urllib3==1.26.25.13 # via # -r hail/hail/python/dev/requirements.txt # types-requests -typing-extensions==4.5.0 +typing-extensions==4.6.2 # via # -c hail/hail/python/dev/../pinned-requirements.txt # astroid @@ -525,7 +527,7 @@ typing-extensions==4.5.0 # pylint uri-template==1.2.0 # via jsonschema -urllib3==1.26.15 +urllib3==1.26.16 # via # -c hail/hail/python/dev/../pinned-requirements.txt # requests @@ -537,7 +539,7 @@ webencodings==0.5.1 # via # bleach # tinycss2 -websocket-client==1.5.1 +websocket-client==1.5.2 # via jupyter-server widgetsnbextension==4.0.7 # via ipywidgets diff --git a/hail/python/hailtop/pinned-requirements.txt b/hail/python/hailtop/pinned-requirements.txt index 7ffc0ae7fbe6..a36c7be65f6c 100644 --- a/hail/python/hailtop/pinned-requirements.txt +++ b/hail/python/hailtop/pinned-requirements.txt @@ -18,20 +18,20 @@ azure-core==1.26.4 # via # azure-identity # azure-storage-blob -azure-identity==1.12.0 +azure-identity==1.13.0 # via -r hail/hail/python/hailtop/requirements.txt azure-storage-blob==12.16.0 # via -r hail/hail/python/hailtop/requirements.txt -boto3==1.26.118 +boto3==1.26.140 # via -r hail/hail/python/hailtop/requirements.txt -botocore==1.29.118 +botocore==1.29.141 # via # -r hail/hail/python/hailtop/requirements.txt # boto3 # s3transfer cachetools==5.3.0 # via google-auth -certifi==2022.12.7 +certifi==2023.5.7 # via requests cffi==1.15.1 # via @@ -60,15 +60,18 @@ google-api-core==2.11.0 # via # google-cloud-core # google-cloud-storage -google-auth==2.17.3 +google-auth==2.18.1 # via # -r hail/hail/python/hailtop/requirements.txt # google-api-core + # google-auth-oauthlib # google-cloud-core # google-cloud-storage +google-auth-oauthlib==0.8.0 + # via -r hail/hail/python/hailtop/requirements.txt google-cloud-core==2.3.2 # via google-cloud-storage -google-cloud-storage==2.8.0 +google-cloud-storage==2.9.0 # via -r hail/hail/python/hailtop/requirements.txt google-crc32c==1.5.0 # via google-resumable-media @@ -102,7 +105,9 @@ multidict==6.0.4 # yarl nest-asyncio==1.5.6 # via -r hail/hail/python/hailtop/requirements.txt -orjson==3.8.10 +oauthlib==3.2.2 + # via requests-oauthlib +orjson==3.8.13 # via -r hail/hail/python/hailtop/requirements.txt portalocker==2.7.0 # via msal-extensions @@ -123,23 +128,26 @@ pycparser==2.21 # via cffi pygments==2.15.1 # via rich -pyjwt[crypto]==2.6.0 +pyjwt[crypto]==2.7.0 # via msal python-dateutil==2.8.2 # via botocore python-json-logger==2.0.7 # via -r hail/hail/python/hailtop/requirements.txt -requests==2.28.2 +requests==2.31.0 # via # azure-core # google-api-core # google-cloud-storage # msal + # requests-oauthlib +requests-oauthlib==1.3.1 + # via google-auth-oauthlib rich==12.6.0 # via -r hail/hail/python/hailtop/requirements.txt rsa==4.9 # via google-auth -s3transfer==0.6.0 +s3transfer==0.6.1 # via boto3 six==1.16.0 # via @@ -152,17 +160,18 @@ sortedcontainers==2.4.0 # via -r hail/hail/python/hailtop/requirements.txt tabulate==0.9.0 # via -r hail/hail/python/hailtop/requirements.txt -typing-extensions==4.5.0 +typing-extensions==4.6.2 # via # azure-core # azure-storage-blob # janus # rich -urllib3==1.26.15 +urllib3==1.26.16 # via # botocore + # google-auth # requests uvloop==0.17.0 ; sys_platform != "win32" # via -r hail/hail/python/hailtop/requirements.txt -yarl==1.9.1 +yarl==1.9.2 # via aiohttp diff --git a/hail/python/hailtop/requirements.txt b/hail/python/hailtop/requirements.txt index 80a874afff5c..2eef59c88726 100644 --- a/hail/python/hailtop/requirements.txt +++ b/hail/python/hailtop/requirements.txt @@ -7,6 +7,7 @@ botocore>=1.20,<2.0 dill>=0.3.1.1,<0.4 frozenlist>=1.3.1,<2 google-auth>=2.14.1,<3 +google-auth-oauthlib>=0.5.2,<1 google-cloud-storage>=1.25.0 humanize>=1.0.0,<2 janus>=0.6,<1.1 diff --git a/hail/python/pinned-requirements.txt b/hail/python/pinned-requirements.txt index 171cada310c5..60d2ad194c95 100644 --- a/hail/python/pinned-requirements.txt +++ b/hail/python/pinned-requirements.txt @@ -33,7 +33,7 @@ azure-core==1.26.4 # -c hail/hail/python/hailtop/pinned-requirements.txt # azure-identity # azure-storage-blob -azure-identity==1.12.0 +azure-identity==1.13.0 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # -r hail/hail/python/hailtop/requirements.txt @@ -41,13 +41,13 @@ azure-storage-blob==12.16.0 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # -r hail/hail/python/hailtop/requirements.txt -bokeh==3.1.0 +bokeh==3.1.1 # via -r hail/hail/python/requirements.txt -boto3==1.26.118 +boto3==1.26.140 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # -r hail/hail/python/hailtop/requirements.txt -botocore==1.29.118 +botocore==1.29.141 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # -r hail/hail/python/hailtop/requirements.txt @@ -57,7 +57,7 @@ cachetools==5.3.0 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # google-auth -certifi==2022.12.7 +certifi==2023.5.7 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # requests @@ -105,18 +105,23 @@ google-api-core==2.11.0 # -c hail/hail/python/hailtop/pinned-requirements.txt # google-cloud-core # google-cloud-storage -google-auth==2.17.3 +google-auth==2.18.1 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # -r hail/hail/python/hailtop/requirements.txt # google-api-core + # google-auth-oauthlib # google-cloud-core # google-cloud-storage +google-auth-oauthlib==0.8.0 + # via + # -c hail/hail/python/hailtop/pinned-requirements.txt + # -r hail/hail/python/hailtop/requirements.txt google-cloud-core==2.3.2 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # google-cloud-storage -google-cloud-storage==2.8.0 +google-cloud-storage==2.9.0 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # -r hail/hail/python/hailtop/requirements.txt @@ -185,7 +190,11 @@ numpy==1.24.3 # contourpy # pandas # scipy -orjson==3.8.10 +oauthlib==3.2.2 + # via + # -c hail/hail/python/hailtop/pinned-requirements.txt + # requests-oauthlib +orjson==3.8.13 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # -r hail/hail/python/hailtop/requirements.txt @@ -237,7 +246,7 @@ pygments==2.15.1 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # rich -pyjwt[crypto]==2.6.0 +pyjwt[crypto]==2.7.0 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # msal @@ -258,7 +267,7 @@ pyyaml==6.0 # via bokeh regex==2023.5.5 # via parsimonious -requests==2.28.2 +requests==2.31.0 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # -r hail/hail/python/requirements.txt @@ -266,6 +275,11 @@ requests==2.28.2 # google-api-core # google-cloud-storage # msal + # requests-oauthlib +requests-oauthlib==1.3.1 + # via + # -c hail/hail/python/hailtop/pinned-requirements.txt + # google-auth-oauthlib rich==12.6.0 # via # -c hail/hail/python/hailtop/pinned-requirements.txt @@ -274,7 +288,7 @@ rsa==4.9 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # google-auth -s3transfer==0.6.0 +s3transfer==0.6.1 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # boto3 @@ -300,7 +314,7 @@ tenacity==8.2.2 # via plotly tornado==6.3.2 # via bokeh -typing-extensions==4.5.0 +typing-extensions==4.6.2 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # azure-core @@ -309,10 +323,11 @@ typing-extensions==4.5.0 # rich tzdata==2023.3 # via pandas -urllib3==1.26.15 +urllib3==1.26.16 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # botocore + # google-auth # requests uvloop==0.17.0 ; sys_platform != "win32" # via @@ -320,9 +335,9 @@ uvloop==0.17.0 ; sys_platform != "win32" # -r hail/hail/python/hailtop/requirements.txt wrapt==1.15.0 # via deprecated -xyzservices==2023.2.0 +xyzservices==2023.5.0 # via bokeh -yarl==1.9.1 +yarl==1.9.2 # via # -c hail/hail/python/hailtop/pinned-requirements.txt # aiohttp diff --git a/web_common/pinned-requirements.txt b/web_common/pinned-requirements.txt index 870f311854ef..a6894f04d55a 100644 --- a/web_common/pinned-requirements.txt +++ b/web_common/pinned-requirements.txt @@ -64,7 +64,7 @@ multidict==6.0.4 # -c hail/web_common/../hail/python/pinned-requirements.txt # aiohttp # yarl -yarl==1.9.1 +yarl==1.9.2 # via # -c hail/web_common/../gear/pinned-requirements.txt # -c hail/web_common/../hail/python/pinned-requirements.txt