From 04a9b0f94a3ba00b27ec94b15192a32dfce7b0e0 Mon Sep 17 00:00:00 2001 From: Chris Fields Date: Mon, 6 Jan 2025 17:48:49 -0600 Subject: [PATCH] test species but with the right file this time --- conf/test.config | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/conf/test.config b/conf/test.config index 756a7a9..3f9bd32 100644 --- a/conf/test.config +++ b/conf/test.config @@ -11,7 +11,7 @@ */ params { - config_profile_name = 'Test profile' + config_profile_name = 'Test MiSeq 16S profile' config_profile_description = 'Minimal test dataset to check pipeline function' // Limit resources so that this can run on GitHub Actions @@ -27,6 +27,5 @@ params { trim_rev = 25 reference = 'https://file-server.igb.illinois.edu/~cjfields/TADA/silva_nr99_v138.1_train_set.fa.gz' run_tree = 'fasttree' - // TODO: figure out why species fails w/ CI - // species = 'https://file-server.igb.illinois.edu/~cjfields/TADA/silva_nr99_v138.1_wSpecies_train_set.fa.gz' + species = 'https://zenodo.org/records/4587955/files/silva_species_assignment_v138.1.fa.gz?download=1' }