sambamba-sort: couldn't parse --memory-limit option

[jpang-van]

if I submit grape-nf to the cluster with following params speficed for mapping process in nextflow.config

withName: mapping {
cpus = 8
memory = 75.GB
time = 6.h
}

I got the could n't parse --memory-limit option error, I specify memory in the wrong format or other issue?, but it is ok for index and other process, any comments?

[jpang-van]

Hi @emi80

any comments for the issue I mentioned above, thanks. If you need .nextflow.log, I can upload it.
thanks

[emi80]

Hi @jpang-van,

apologies for the late reply. I will look into the issue.
Would it be possible for you to upload a copy of the .command.sh file of the failing process?

[mainguyenanhvu]

I used the command:

sambamba sort -m $MEM -t $NCORE -o $bam_noalt.tmp.bam /dev/stdin