diff --git a/DESCRIPTION b/DESCRIPTION index a384e45..398e783 100755 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -60,7 +60,7 @@ Suggests: BiocManager, phyloseq VignetteBuilder: knitr -RoxygenNote: 7.0.2.9000 +RoxygenNote: 7.1.0 Date: 2020-04-28 Encoding: UTF-8 biocViews: diff --git a/cran-comments.md b/cran-comments.md index 324577c..72fa8f7 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,12 +1,44 @@ -## Test environments +## Test environments and check results -* local desktop: ubuntu 16.04 install, R 3.5.3 -* on travis-ci: ubuntu 16.04.6, devel, bioc-release, bioc-devel -* win-builder R 3.6.1 and development +Some packages seem to not be avaialble for R 4.0.0. I am not sure what to do about this. It works on my computer and winbuilder. -## R CMD check results +### local: ubuntu 18.04, R 3.6.3 -No NOTEs, WARNINGs, or ERRORs. +0 errors | 0 warnings | 0 notes + +### travis-ci: ubuntu 14.04.05, R development + +Warning message: + +package ‘BiocManager, zlibbioc’ is not available (for R Under development) + +The command "Rscript -e 'install.packages(c("BiocManager, zlibbioc"));if (!all(c("BiocManager, zlibbioc") %in% installed.packages())) { q(status = 1, save = "no")}'" failed and exited with 1 during . + +### travis-ci: ubuntu 14.04.05, bioc-release + +Warning message: + +package ‘BiocManager, zlibbioc’ is not available (for R version 4.0.0) + +The command "Rscript -e 'install.packages(c("BiocManager, zlibbioc"));if (!all(c("BiocManager, zlibbioc") %in% installed.packages())) { q(status = 1, save = "no")}'" failed and exited with 1 during . + + +### Rhub: Windows Server 2008 R2 SP1, R-devel, 32/64 bit + +* checking package dependencies ... ERROR +Packages required but not available: + 'taxa', 'stringr', 'ggplot2', 'igraph', 'scales', 'taxize', 'seqinr', + 'reshape2', 'zoo', 'traits', 'RCurl', 'ape', 'reshape', 'lazyeval', + 'dplyr', 'readr', 'rlang', 'biomformat', 'ggfittext', 'vegan', + 'ggrepel', 'cowplot', 'GA', 'Rcpp', 'svglite', 'tibble' + +### Win builder: R devel + +0 errors | 0 warnings | 0 notes + +### Win builder: R version 4.0.0 (2020-04-24) + +0 errors | 0 warnings | 0 notes ## Downstream dependencies diff --git a/man/hmp_otus.Rd b/man/hmp_otus.Rd index 37617e0..509e0f0 100644 --- a/man/hmp_otus.Rd +++ b/man/hmp_otus.Rd @@ -3,7 +3,9 @@ \name{hmp_otus} \alias{hmp_otus} \title{A HMP subset} -\format{A 1,000 x 52 tibble.} +\format{ +A 1,000 x 52 tibble. +} \source{ Subset from data available at https://www.hmpdacc.org/hmp/HMQCP/ } diff --git a/man/hmp_samples.Rd b/man/hmp_samples.Rd index aa62227..7041850 100644 --- a/man/hmp_samples.Rd +++ b/man/hmp_samples.Rd @@ -3,7 +3,9 @@ \name{hmp_samples} \alias{hmp_samples} \title{Sample information for HMP subset} -\format{A 50 x 3 tibble.} +\format{ +A 50 x 3 tibble. +} \source{ Subset from data available at https://www.hmpdacc.org/hmp/HMQCP/ }