From c47498d6144eae0e0a187816e8aee9986f0fa479 Mon Sep 17 00:00:00 2001 From: albert <92109627+Albkat@users.noreply.github.com> Date: Mon, 29 Apr 2024 17:37:50 +0200 Subject: [PATCH 1/3] update solvation docs Signed-off-by: albert <92109627+Albkat@users.noreply.github.com> --- man/xtb.1.adoc | 17 +++++++++++++++-- src/xhelp.f90 | 4 ++-- 2 files changed, 17 insertions(+), 4 deletions(-) diff --git a/man/xtb.1.adoc b/man/xtb.1.adoc index b829f3291..a6de6a95b 100644 --- a/man/xtb.1.adoc +++ b/man/xtb.1.adoc @@ -124,7 +124,7 @@ OPTIONS 'ethylacetate', 'furane', 'hexandecane', 'hexane', 'methanol', 'nitromethane', 'octanol', 'woctanol', 'phenol', 'toluene', 'thf', 'water'. The solvent input is not case-sensitive. - The Gsolv reference state can be chosen as 'reference' or 'bar1M' (default). + The Gsolv reference state can be chosen as 'reference', 'bar1M', or 'gsolv' (default). *-g, --gbsa* 'SOLVENT' ['STATE']:: generalized born (GB) model with solvent accessable surface (SASA) model, @@ -132,7 +132,20 @@ OPTIONS 'CH2Cl2', 'CHCl3', 'CS2', 'DMF' (only GFN2-xTB), 'DMSO', 'ether', 'H2O', 'methanol', 'n-hexane' (only GFN2-xTB), 'THF' and 'toluene'. The solvent input is not case-sensitive. - The Gsolv reference state can be chosen as 'reference' or 'bar1M' (default). + The Gsolv reference state can be chosen as 'reference', 'bar1M', or 'gsolv' (default). + +*--cosmo* 'SOLVENT/EPSILON':: + domain decomposition conductor-like screening model (ddCOSMO) + available solvents are all solvents that are available for alpb. + Additionally, the dielectric constant can be set manually or an ideal conductor + can be chosen by setting epsilon to infinity. + +--tmcosmo 'SOLVENT/EPSILON':: + same as --cosmo, but uses TM convention for writing the .cosmo files. + +--cpcmx 'SOLVENT':: + extended conduction-like polarizable continuum solvation model (CPCM-X), + available solvents are all solvents included in the Minnesota Solvation Database. *--cma* :: shifts molecule to center of mass and transforms cartesian coordinates diff --git a/src/xhelp.f90 b/src/xhelp.f90 index 0ba5ee763..7390344fe 100644 --- a/src/xhelp.f90 +++ b/src/xhelp.f90 @@ -165,7 +165,7 @@ subroutine help(iunit) " hexandecane, hexane, methanol, nitromethane, octanol, woctanol, phenol, toluene,",& " thf, water.",& " The solvent input is not case-sensitive. The Gsolv",& - " reference state can be chosen as reference or bar1M (default).",& + " reference state can be chosen as reference, bar1M, or gsolv (default).",& "",& "-g, --gbsa SOLVENT [STATE]",& " generalized born (GB) model with solvent accessable surface (SASA) model,",& @@ -173,7 +173,7 @@ subroutine help(iunit) " CHCl3, CS2, DMF (only GFN2-xTB), DMSO, ether, H2O, methanol,",& " n-hexane (only GFN2-xTB), THF and toluene.",& " The solvent input is not case-sensitive.", & - " The Gsolv reference state can be chosen as reference or bar1M (default).",& + " The Gsolv reference state can be chosen as referencen, bar1M, or gsolv (default).",& "",& "--cosmo SOLVENT/EPSILON",& " domain decomposition conductor-like screening model (ddCOSMO),",& From cfc0c370e97d8778a18816a6e77b732f282468c3 Mon Sep 17 00:00:00 2001 From: albert <92109627+Albkat@users.noreply.github.com> Date: Mon, 29 Apr 2024 17:44:46 +0200 Subject: [PATCH 2/3] Update xhelp.f90 --- src/xhelp.f90 | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/xhelp.f90 b/src/xhelp.f90 index 7390344fe..98fdd44d0 100644 --- a/src/xhelp.f90 +++ b/src/xhelp.f90 @@ -173,7 +173,7 @@ subroutine help(iunit) " CHCl3, CS2, DMF (only GFN2-xTB), DMSO, ether, H2O, methanol,",& " n-hexane (only GFN2-xTB), THF and toluene.",& " The solvent input is not case-sensitive.", & - " The Gsolv reference state can be chosen as referencen, bar1M, or gsolv (default).",& + " The Gsolv reference state can be chosen as reference, bar1M, or gsolv (default).",& "",& "--cosmo SOLVENT/EPSILON",& " domain decomposition conductor-like screening model (ddCOSMO),",& From b550953ef067e84073c3fb7faa73e7d34e6a98e5 Mon Sep 17 00:00:00 2001 From: albert <92109627+Albkat@users.noreply.github.com> Date: Tue, 30 Apr 2024 07:57:46 +0200 Subject: [PATCH 3/3] Update xtb.1.adoc --- man/xtb.1.adoc | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/man/xtb.1.adoc b/man/xtb.1.adoc index a6de6a95b..4f417b48a 100644 --- a/man/xtb.1.adoc +++ b/man/xtb.1.adoc @@ -140,10 +140,10 @@ OPTIONS Additionally, the dielectric constant can be set manually or an ideal conductor can be chosen by setting epsilon to infinity. ---tmcosmo 'SOLVENT/EPSILON':: +*--tmcosmo* 'SOLVENT/EPSILON':: same as --cosmo, but uses TM convention for writing the .cosmo files. ---cpcmx 'SOLVENT':: +*--cpcmx* 'SOLVENT':: extended conduction-like polarizable continuum solvation model (CPCM-X), available solvents are all solvents included in the Minnesota Solvation Database.