.gitignore

#output directories
*output*
*output/GB_wide/*.tsv
*output/spatiophylogenetic_modelling/*
*output/PCA*
*.log*
*.qs*
*.txt*
*.RDS*


#supplementary tables that should be pushed
!*/
!R_grambank/output/spatiophylogenetic_modelling/featurewise/dual_summary_effects.tsv

#images
**/*.png
**/*.tiff
*.jpg*
*Rplots.pdf

#EDGE tree full raw mcct
R_grambank/spatiophylogenetic_modelling/phylogenies/EDGE6635-merged-relabelled.tree

#aux files
.DS_Store
*Rproj*
*rdata*
*Rhistory*
*.Rproj.user

#specific to ignore
R_grambank/output/GB_wide/*.tsv
R_grambank/output/PCA*
R_grambank/output/non_GB_datasets/glottolog-cldf_wide_df.tsv
R_grambank/output/non_GB_datasets/glottolog_AUTOTYP_areas.tsv
.Rproj.user
R_grambank/output/spatiophylogenetic_modelling/processed_data/jaeger_removed.csv
R_grambank/output/spatiophylogenetic_modelling/featurewise/results_debug/*
R_grambank/output/spatiophylogenetic_modelling/*mat.tsv
R_grambank/output/spatiophylogenetic_modelling/phylo_covar_mat.tsv
R_grambank/output/spatiophylogenetic_modelling/phylo_prec_mat.tsv
R_grambank/output/spatiophylogenetic_modelling/spatial_covar_mat.tsv
R_grambank/output/spatiophylogenetic_modelling/spatial_prec_mat.tsv
R_grambank/output/spatiophylogenetic_modelling/featurewise/results/phylo_only/I
*_log.txt
R_grambank/output/spatiophylogenetic_modelling/*
R_grambank/.Rapp.history
R_grambank/unusualness/analysis/.Rapp.history