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<!DOCTYPE html>
<html>
<head>
<meta charset="UTF-8">
<meta name="viewport" content="width=device-width, initial-scale=1">
<title>Monkeypox 2022 global epidemiology; Report {{ date }}</title>
<meta name="description" content="Monkeypox 2022 outbreak briefing report from Global.health">
<link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/water.css@2/out/water.css">
<link href="https://fonts.googleapis.com/css2?family=Inter:wght@300;400;500;600&display=swap" rel="stylesheet">
<link rel="stylesheet" href="style.css">
<link rel="shortcut icon" type="image/x-icon" href="https://global.health/wp-content/uploads/2020/10/gs-favicon-green.png">
<link rel="apple-touch-icon" href="https://global.health/wp-content/uploads/2020/10/gs-favicon-green.png">
<script src="https://cdn.plot.ly/plotly-2.12.1.min.js"></script>
</head>
<body>
<main>
<nav>
<img class="logo" src="https://global.health/wp-content/uploads/2020/07/gh-logo-full-black.png" alt="Global.health logo"></li>
<ul>
<li><a href="/archives/">Archives</a></li>
<li><a href="https://github.com/globaldothealth/monkeypox">GitHub</a></li>
<li><a href="https://map.monkeypox.global.health">Map</a></li>
</ul>
</nav>
<h1>Monkeypox 2022 global epidemiology; Report {{ date }}</h1>
<p>From the <a href="https://global.health">Global.health</a> team (<a href="mailto:info@global.health">info@global.health</a>)
• <a href="/{{ date }}">Permalink</a></p>
<h2>Summary</h2>
{{#info}}
<div class="info">
<p>{{ info }}</p>
</div>
{{/info}}
<p>The Monkeypox 2022 outbreak has to date been detected in
{{ n_countries_confirmed_or_suspected }}
countries (either confirmed or suspected cases), with
{{ n_countries_confirmed }} confirming transmission,
{{ n_countries_suspected_only }} countries continuing to have suspected cases only,
and {{ n_countries_discarded }} countries having discarded cases that were suspected,
out of which {{ n_countries_discarded_only }} have only discarded cases.
Overall there are {{ n_confirmed }} confirmed and {{ n_suspected }}
suspected cases (as of
{{ date }}; <strong>Figure 1A</strong>). Since {{ day_before_yesterday }}, {{ n_diff_confirmed }}
new confirmed cases have
been reported{{ text_diff_countries }} (<strong>Figure 1B</strong>).</p>
<p class="print">Turn over for figure →</p>
<figure class="mainfigure">
{{{ embed_choropleth }}}
{{{ embed_counts }}}
<figcaption>
<strong>Figure 1</strong>: <strong>A</strong>) Number of confirmed cases per country.
Lines show reported travel history between countries.<br><strong>B</strong>) Number of
cumulative confirmed cases and number of countries who have reported confirmed
cases.
</figcaption>
</figure>
{{{ embed_table_confirmed_cases }}}
<p><strong>Table 1</strong>: Number of confirmed cases by country (highest
to lowest) and percentage change since last week.</p>
<p>Of the {{ n_confirmed }} number of confirmed cases, {{ n_travel_history
}} reported travel history. For {{ n_unknown_travel_history }} cases, travel
history location was unknown.</p>
<p> The mean delay between confirmation and entry of suspected
case was {{ mean_delay_suspected_confirmed }} days
(median {{ median_delay_suspected_confirmed }} days) and varied by country
(n = {{ n_suspected_confirmed }} total number of
cases where the dates of suspected and confirmed was known; <strong>Figure 2</strong>).
Most countries do not report suspected cases.</p>
<figure>
<img src="figures/delay-to-confirmation.png" alt="graph: Delay to confirmation by country">
<figcaption>
<strong>Figure 2</strong>: Delay to confirmation by country.
<a href="/{{ date }}/figures/delay-to-confirmation.png">Link to figure</a>
</figcaption>
</figure>
<p>Genomic data is being reported via multiple open source repositories. In
order to support ongoing genomic surveillance and improve
representativeness of genomic sequences we here plot the relationship
between number of genomic sequences vs. number of confirmed cases
(<strong>Figure 3</strong>). The (combined) number of genomic sequences of the current
outbreak is {{ n_genomes }},
where we consider a genomic sequence to be related to the current outbreak if
it was reported in 2022 with Clade IIb. The country with the highest number of
genomic sequences reported is {{ country_with_most_genomes }}. A
comparison between the number of genomes and number of confirmed cases
is below (<strong>Figure 3</strong>).</p>
<figure>
<img style="width: 75%" src="figures/genomics.png" alt="graph: Number of sequences from Nextstrain and confirmed cases">
<figcaption>
<strong>Figure 3</strong>: Number of sequences (downloaded via Nextstrain) and confirmed cases.
<a href="/{{ date }}/figures/genomics.png">Link to figure</a>
</figcaption>
</figure>
<p> The age and gender ratio is shown in <strong>Figure 4</strong>. {{
percentage_male }} percent of cases (for which there was an entry for
gender) are described as male. The mean age of confirmed cases is {{
mean_age_confirmed_cases }}.
<figure>
<img style="width: 85%" src="figures/age-gender.png" alt="graph: Age and gender distribution">
<figcaption>
<strong>Figure 4</strong>: Age and gender distribution of
monkeypox confirmed cases in 2022.
{{ pc_valid_age_gender_in_confirmed }}% of confirmed cases include sufficient metadata to be included in this figure.
Of these cases, {{ pc_age_range_multiple_buckets }}% include reported age ranges that span multiple age categories.
Under such circumstances, counts are evenly distributed among the categories that capture the reported age range.
<a href="/{{ date }}/figures/age-gender.png">Link to figure</a>
</figcaption>
</figure>
<p><strong>Data accessibility and reproducibility</strong>: All data used in this report are
available from: <a
href="https://github.com/globaldothealth/monkeypox">https://github.com/globaldothealth/monkeypox</a>.
Should you identify any issues or have questions please raise an issue
on GitHub or write to us: <a
href="mailto:info@global.health">info@global.health</a>. Latest
data can be downloaded from here: <a
href="https://github.com/globaldothealth/monkeypox/blob/main/latest.csv">https://github.com/globaldothealth/monkeypox/blob/main/latest.csv</a>
<p>Please see a description of the data curation process here: <a
href="https://www.thelancet.com/journals/laninf/article/PIIS1473-3099(22)00359-0/fulltext">
https://www.thelancet.com/journals/laninf/article/PIIS1473-3099(22)00359-0/fulltext</a>
</main>
</body>
</html>