Bring master up to date with dev #452
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…ion to a regulation of that term, for a particular gene product instance.
Exclude annotations to regulated terms
GPAD export needs an ontojournal.
…to root types list.
Add Uberon life cycle stage and PO plant structure development stage to root types list.
Allow skipping ShEx in --validate-go-cams when --shex is omitted
… Fix null pointer exception when reporting negated types during ShEx validation.
Fixes for handling negations in ShEx validation
Filter out root MF annotations if any other MF annotation exists for the GP.
Retrieve creation date from evidence node.
Remove 'has participant' as valid extension relation
Log4j PR for testing on dev
Add log4j-core; update to log4j 2.16.0
Add log4j xml config
Update ant, junit, commons-io.
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