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add located_in and is_active_in to allowed list of relations fixes #385 #384

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merged 2 commits into from
May 6, 2021
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add located_in and is_active_in to allowed list of relations fixes #385 #384

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65e7257
add located_in and is_active_in to allowed list of relations
sierra-moxon May 4, 2021
3ef346f
fix prefix order
sierra-moxon May 4, 2021
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4 changes: 4 additions & 0 deletions minerva-converter/src/main/resources/org/geneontology/minerva/legacy/sparql/gpad-basic.rq
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Original file line number Diff line number Diff line change
Expand Up @@ -25,6 +25,8 @@ PREFIX BFO: <http://purl.obolibrary.org/obo/BFO_>
PREFIX CHEBI: <http://purl.obolibrary.org/obo/CHEBI_>
PREFIX PR: <http://purl.obolibrary.org/obo/PR_>
PREFIX molecular_function: <http://purl.obolibrary.org/obo/GO_0003674>
PREFIX located_in: <http://purl.obolibrary.org/obo/RO_0001025>
PREFIX is_active_in: <http://purl.obolibrary.org/obo/RO_0002432>

SELECT DISTINCT ?pr ?pr_type ?rel ?target ?blank_comp ?target_type
WHERE {
Expand Down Expand Up @@ -55,6 +57,8 @@ WHERE {
acts_upstream_of_or_within_positive_effect:
acts_upstream_of_or_within_negative_effect:
contributes_to:
located_in:
is_active_in:
}

# the value of ?pr_type should be IRI.
Expand Down