Dev

.gitignore

@@ -10,3 +10,11 @@ minerva-cli/bin/reactome-entities-blazegraph.jnl
 *.jnl
 minerva-cli/go-cam-schema.shex
 minerva-cli/go-cam-shapes.shapeMap
+minerva-cli/shape_report_shouldpass.txt
+minerva-cli/shape_explanation_shouldpass.txt
+minerva-cli/.DS_Store
+minerva-cli/.DS_Store
+minerva-server/src/test/resources/validate.shapemap
+minerva-server/src/test/resources/validate.shex
+minerva-server/src/test/resources/validate.shapemap
+minerva-server/src/test/resources/validate.shex

.travis.yml

@@ -8,4 +8,4 @@ jdk:
 # Warning: travis fails, when log output >4M
 script:
   - mvn clean test
-
+  - java -jar minerva-cli/bin/minerva-cli.jar --import-owl-models -f minerva-server/src/test/resources/models/should_pass/ -j tmp_blazegraph.jnl

minerva-cli/pom.xml

@@ -83,7 +83,16 @@
 			<artifactId>minerva-server</artifactId>
 			<version>${project.parent.version}</version>
 		</dependency>
-
+		<dependency>
+			<groupId>org.geneontology</groupId>
+	        <artifactId>whelk_2.12</artifactId>
+	        <version>0.1.3</version>
+		</dependency>
+		  	<dependency>
+  			<groupId>org.obolibrary.robot</groupId>
+  			<artifactId>robot-core</artifactId>
+ 			<version>1.6.0</version>
+		</dependency>
 	</dependencies>
 
 </project>

minerva-cli/src/main/java/org/geneontology/minerva/cli/BatchModelUpdater.java

@@ -0,0 +1,43 @@
+/**
+ * 
+ */
+package org.geneontology.minerva.cli;
+
+import java.io.File;
+import java.io.IOException;
+import java.util.Set;
+
+import org.apache.commons.io.FileUtils;
+import org.geneontology.minerva.BlazegraphMolecularModelManager;
+import org.geneontology.minerva.curie.CurieHandler;
+import org.geneontology.minerva.curie.MappedCurieHandler;
+import org.openrdf.repository.RepositoryException;
+import org.semanticweb.owlapi.apibinding.OWLManager;
+import org.semanticweb.owlapi.formats.TurtleDocumentFormat;
+import org.semanticweb.owlapi.io.FileDocumentTarget;
+import org.semanticweb.owlapi.model.IRI;
+import org.semanticweb.owlapi.model.OWLClass;
+import org.semanticweb.owlapi.model.OWLClassAssertionAxiom;
+import org.semanticweb.owlapi.model.OWLClassExpression;
+import org.semanticweb.owlapi.model.OWLDataFactory;
+import org.semanticweb.owlapi.model.OWLNamedIndividual;
+import org.semanticweb.owlapi.model.OWLOntology;
+import org.semanticweb.owlapi.model.OWLOntologyCreationException;
+import org.semanticweb.owlapi.model.OWLOntologyManager;
+import org.semanticweb.owlapi.model.OWLOntologyStorageException;
+import org.semanticweb.owlapi.reasoner.NodeSet;
+import org.semanticweb.owlapi.reasoner.OWLReasoner;
+import org.semanticweb.owlapi.reasoner.OWLReasonerFactory;
+import org.semanticweb.owlapi.reasoner.structural.StructuralReasonerFactory;
+import org.semanticweb.owlapi.search.EntitySearcher;
+
+import com.google.common.collect.Sets;
+
+/**
+ * @author bgood
+ *
+ */
+public class BatchModelUpdater {
+
+
+}