gorule-0000006.md

layout	id	title	type	fail_mode	status	contact	implementations	examples
rule	GORULE:0000006	IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC	filter	hard	implemented	go-quality@lists.stanford.edu	language source python https://github.com/biolink/ontobio/blob/master/ontobio/io/qc.py	fail pass comment format input Fails because uses IEP with a molecular function term. gaf GeneDB PF3D7_0507500 SUB1 GO:0005634 PMID:12764150 IEP F subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GeneDB comment format input Fails because uses HEP with a molecular function term. gaf GeneDB PF3D7_0507500 SUB1 GO:0005634 PMID:12764150 HEP F subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GeneDB comment format input Fails because uses IEP with a cellular component term. gaf GeneDB PF3D7_0507500 SUB1 GO:0005634 PMID:12764150 IEP F subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GeneDB comment format input Should pass gaf GeneDB PF3D7_0507500 SUB1 GO:0075317 PMID:12764150 IEP F subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GeneDB

The IEP and its high throughput equivalent, HEP, evidence codes are used where process involvement is inferred from the timing or location of expression of a gene, particularly when comparing a gene that is not yet characterized with the timing or location of expression of genes known to be involved in a particular process. This type of annotation is only suitable with terms from the Biological Process ontology, except when the annotation comes from an inter ontology link, in which case all GO aspects are allowed.

For more information, see the binding guidelines on the GO wiki. Error report (number of errors) in [db_species]-summary.txt & owltools-check.txt (details).