Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

What rank to assign to hybrid formulas #1354

Closed
gbif-portal opened this issue May 17, 2018 · 6 comments
Closed

What rank to assign to hybrid formulas #1354

gbif-portal opened this issue May 17, 2018 · 6 comments

Comments

@gbif-portal
Copy link
Collaborator

gbif-portal commented May 17, 2018

What rank to assign to hybrid formulas

According to the data quality requirements, taxonRank is a required field. However, what taxonRank should be used for hybrid formulas?

Example, which ideally should be written as:

Chenopodium album L. x Chenopodium hircinum

Note that hybrid is not an accepted taxonRank


User provided contact info: @peterdesmet
System: Chrome 66.0.3359 / Mac OS X 10.13.3
User: See in registry
Referer: https://www.gbif.org/species/141266176/verbatim
Window size: width 1238 - height 759
API log
Site log
System health at time of feedback: OPERATIONAL

@peterdesmet
Copy link
Member

peterdesmet commented May 17, 2018

Markdown got messed up (anyone care to correct, I cannot edit), here is the link to the example: https://www.gbif.org/species/141266176/verbatim

@peterdesmet
Copy link
Member

Note that GBIF can recognize hybrid formulas in name type. It would be good to have guidance on how to populate taxonRank for those.

@MortenHofft
Copy link
Member

MortenHofft commented May 22, 2018

Markdown got messed up

Due to excessive spam links we have had to introduce messing up markdown. It is a real shame. Sorry that it troubles actual users

@thomasstjerne
Copy link

Hi @peterdesmet
If its a hybrid between two species, I would suggest using "species" as rank, if its a hybrid between subspecies, use "subspecies" as rank etc.

When the rank differ between the two hybridizing taxa, I don´t know what makes most sense, and it seems that the backbone uses the lower rank in some cases and the higher in other:

https://www.gbif.org/species/9235228
https://www.gbif.org/species/9268206

Maybe @mdoering knows?

@mdoering
Copy link
Member

The backbone uses the rank given by the original sources.
But the code does specify what to do in such cases:

If the postulated or known parent taxa are at unequal ranks, the appropriate rank of the nothotaxon is the lowest of these ranks.

https://www.iapt-taxon.org/nomen/pages/main/art_h5.html

@peterdesmet
Copy link
Member

Thanks for the reply!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

6 participants