From 4a4f609aa6ae18dd63cf0b8ac76aeafd963c4e15 Mon Sep 17 00:00:00 2001 From: Bjoern Gruening Date: Fri, 21 Feb 2020 18:55:52 +0100 Subject: [PATCH] remove AU temporary --- 1-PreProcessing/README.md | 8 ++++---- 2-Assembly/README.md | 8 ++++---- 3-MRCA/README.md | 10 +++++----- 4-Variation/README.md | 10 +++++----- 5-S-analysis/README.md | 8 ++++---- 6-RecombinationSelection/README.md | 8 ++++---- 6 files changed, 26 insertions(+), 26 deletions(-) diff --git a/1-PreProcessing/README.md b/1-PreProcessing/README.md index b79d1521..deb9e041 100644 --- a/1-PreProcessing/README.md +++ b/1-PreProcessing/README.md @@ -1,7 +1,7 @@ -| usegalaxy.org | usegalaxy.org.au | usegalaxy.eu | -|:--------:|:------:|:------------:| -| [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.org/u/aun1/w/covid-19-pre-pp) | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)]() | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)]( https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-read-pre-processing) | -| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-pre-processing) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() | +| usegalaxy.org | usegalaxy.eu | +|:--------:|:------------:| +| [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.org/u/aun1/w/covid-19-pre-pp) | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)]( https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-read-pre-processing) | +| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-pre-processing) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() | # Preprocessing of raw SARS-CoV-2 reads diff --git a/2-Assembly/README.md b/2-Assembly/README.md index fbaa8eba..1b787ff7 100644 --- a/2-Assembly/README.md +++ b/2-Assembly/README.md @@ -1,7 +1,7 @@ -| usegalaxy.org | usegalaxy.org.au | usegalaxy.eu | -|:--------:|:------:|:------------:| -| [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.org/u/aun1/w/covid-19-assembly) | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)]() | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-assembly) | -| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-assembly) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() | +| usegalaxy.org | usegalaxy.eu | +|:--------:|:------------:| +| [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.org/u/aun1/w/covid-19-assembly) | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-assembly) | +| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-assembly) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() | # Assembly of SARS-CoV-2 from pre-processed reads diff --git a/3-MRCA/README.md b/3-MRCA/README.md index 75823c5e..c0b1284f 100644 --- a/3-MRCA/README.md +++ b/3-MRCA/README.md @@ -1,8 +1,8 @@ -| usegalaxy.org | usegalaxy.org.au | usegalaxy.eu | -|:--------:|:------:|:------------:| -| [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.org/u/aun1/w/mrca) | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)]() | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-mrca-analysis) -| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-mrca-date) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/h/covid-19-mrca-analysis) | -| [![Jupyter Notebook](https://img.shields.io/static/v1?label=Jupyter%20Notebook&message=run&color=blue)](MRCA_Estimation_Notebook.ipynb) | [![Jupyter Notebook](https://img.shields.io/static/v1?label=Jupyter%20Notebook&message=run&color=blue)](MRCA_Estimation_Notebook.ipynb) | [![Jupyter Notebook](https://img.shields.io/static/v1?label=Jupyter%20Notebook&message=run&color=blue)](MRCA_Estimation_Notebook.ipynb) | +| usegalaxy.org | usegalaxy.eu | +|:--------:|:------------:| +| [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.org/u/aun1/w/mrca) | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-mrca-analysis) +| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-mrca-date) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/h/covid-19-mrca-analysis) | +| [![Jupyter Notebook](https://img.shields.io/static/v1?label=Jupyter%20Notebook&message=run&color=blue)](MRCA_Estimation_Notebook.ipynb) | [![Jupyter Notebook](https://img.shields.io/static/v1?label=Jupyter%20Notebook&message=run&color=blue)](MRCA_Estimation_Notebook.ipynb) | # Dating the most recent common ancestor (MRCA) of SARS-CoV-2 diff --git a/4-Variation/README.md b/4-Variation/README.md index 9ba45637..5f993b4e 100644 --- a/4-Variation/README.md +++ b/4-Variation/README.md @@ -1,8 +1,8 @@ -| usegalaxy.org | usegalaxy.org.au | usegalaxy.eu | -|:--------:|:------:|:------------:| -| [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.org/u/aun1/w/covid-19-variation-analysis) | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)]() | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-variation-analysis) | -| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-variation) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/h/covid-19-intra-variation) | -| [![Jupyter Notebook](https://img.shields.io/static/v1?label=Jupyter%20Notebook&message=run&color=blue)](variation_analysis.ipynb) | [![Jupyter Notebook](https://img.shields.io/static/v1?label=Jupyter%20Notebook&message=run&color=blue)](variation_analysis.ipynb) | [![Jupyter Notebook](https://img.shields.io/static/v1?label=Jupyter%20Notebook&message=run&color=blue)](variation_analysis.ipynb) | +| usegalaxy.org | usegalaxy.eu | +|:--------:|:------------:| +| [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.org/u/aun1/w/covid-19-variation-analysis) | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-variation-analysis) | +| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-variation) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/h/covid-19-intra-variation) | +| [![Jupyter Notebook](https://img.shields.io/static/v1?label=Jupyter%20Notebook&message=run&color=blue)](variation_analysis.ipynb) | [![Jupyter Notebook](https://img.shields.io/static/v1?label=Jupyter%20Notebook&message=run&color=blue)](variation_analysis.ipynb) | # Analysis of variation within individual COVID-19 samples ## What's the point? diff --git a/5-S-analysis/README.md b/5-S-analysis/README.md index 3d52bd59..ddc2f0e5 100644 --- a/5-S-analysis/README.md +++ b/5-S-analysis/README.md @@ -1,8 +1,8 @@ -| usegalaxy.org | usegalaxy.org.au | usegalaxy.eu | -|:--------:|:------:|:------------:| -| [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.org/u/aun1/w/covid-19-s-gene-aa) | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)]() | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-s-gene-conservation) | -| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-s-protein-aa) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/h/covid-19-s-gene-conservation) | +| usegalaxy.org | usegalaxy.eu | +|:--------:|:------------:| +| [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.org/u/aun1/w/covid-19-s-gene-aa) | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-s-gene-conservation) | +| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-s-protein-aa) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/h/covid-19-s-gene-conservation) | # Analysis of S-protein polymorphism diff --git a/6-RecombinationSelection/README.md b/6-RecombinationSelection/README.md index 33dded48..25eae445 100644 --- a/6-RecombinationSelection/README.md +++ b/6-RecombinationSelection/README.md @@ -1,7 +1,7 @@ -| usegalaxy.org | usegalaxy.org.au | usegalaxy.eu | -|:--------:|:------:|:------------:| -| [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.org/u/aun1/w/covid-19-recsel) | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)]() | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-recsel) | -| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-recsel) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/h/covid-19-recombination-and-selection-analysis) | +| usegalaxy.org | usegalaxy.eu | +|:--------:|:------------:| +| [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.org/u/aun1/w/covid-19-recsel) | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-recsel) | +| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-recsel) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/h/covid-19-recombination-and-selection-analysis) | # Evolutionary Analysis