-
Notifications
You must be signed in to change notification settings - Fork 0
/
test_params.txt
23 lines (23 loc) · 1.27 KB
/
test_params.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
analysis_name: prr5
number_samples: 2
number_experiments: 2
experimental_design: (1,2)
installation_directory: /home/gabfergar/github_repositories/
working_directory: /home/gabfergar/tmp/
path_annotation: /home/gabfergar/github_repositories/ChipSeqPipelineNoSGE/example/chromosome1.gtf
path_genome: /home/gabfergar/github_repositories/ChipSeqPipelineNoSGE/example/chromosome1.fa
paired: 0
path_chip_1: /home/gabfergar/github_repositories/ChipSeqPipelineNoSGE/example/chip_prr5_chr1.fq.gz
path_chip_1: /home/gabfergar/github_repositories/ChipSeqPipelineNoSGE/example/chip_prr5_chr1.fq.gz
path_chip_3: /home/gabfergar/github_repositories/ChipSeqPipelineNoSGE/example/chip_prr5_chr1.fq.gz
path_chip_4: /home/gabfergar/github_repositories/ChipSeqPipelineNoSGE/example/chip_prr5_chr1.fq.gz
path_control_1: /home/gabfergar/github_repositories/ChipSeqPipelineNoSGE/example/input_prr5_chr1.fq.gz
path_control_2: /home/gabfergar/github_repositories/ChipSeqPipelineNoSGE/example/input_prr5_chr1.fq.gz
path_control_3: /home/gabfergar/github_repositories/ChipSeqPipelineNoSGE/example/input_prr5_chr1.fq.gz
path_control_4: /home/gabfergar/github_repositories/ChipSeqPipelineNoSGE/example/input_prr5_chr1.fq.gz
broad: 0
upstream_limit: 1000
downstream_limit: 1000
motif_length: 8
motif_size: 100
chromosome: 1