From 21425cef018e4160425a7f9edeb774f2a47cd9da Mon Sep 17 00:00:00 2001 From: hb Date: Thu, 29 Jun 2017 20:42:36 -0700 Subject: [PATCH] REVDEP: Reran reverse package dependency checks on 32 (was 23) packages (Issue #27) --- revdep/README.md | 216 +++++++++++++++++++++++++++++++-------------- revdep/checks.rds | Bin 8620 -> 9609 bytes revdep/problems.md | 28 ++++-- revdep/timing.md | 59 +++++++------ 4 files changed, 204 insertions(+), 99 deletions(-) diff --git a/revdep/README.md b/revdep/README.md index eaea9de..8533865 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -4,49 +4,58 @@ |setting |value | |:--------|:----------------------------| -|version |R version 3.3.3 (2017-03-06) | +|version |R version 3.4.0 (2017-04-21) | |system |x86_64, linux-gnu | |ui |X11 | |language |en | |collate |en_US.UTF-8 | |tz |America/Los_Angeles | -|date |2017-04-16 | +|date |2017-06-29 | ## Packages -|package |* |version |date |source | -|:-------|:--|:-------|:----------|:-------------| -|globals | |0.9.0 |2017-03-10 |cran (@0.9.0) | +|package |* |version |date |source | +|:-------|:--|:-------|:----------|:--------------| +|globals | |0.10.0 |2017-04-17 |cran (@0.10.0) | # Check results -23 packages - -|package |version | errors| warnings| notes| -|:--------------------|:-------|------:|--------:|-----:| -|ACNE |0.8.1 | 0| 0| 0| -|aroma.affymetrix |3.1.0 | 0| 0| 0| -|aroma.cn |1.6.1 | 0| 0| 0| -|aroma.core |3.1.0 | 0| 0| 0| -|calmate |0.12.1 | 0| 0| 0| -|doFuture |0.5.0 | 0| 0| 0| -|fiery |0.2.2 | 0| 0| 0| -|future.BatchJobs |0.14.0 | 0| 0| 0| -|future |1.4.0 | 0| 0| 0| -|GeneBreak |1.4.0 | 0| 0| 1| -|googleComputeEngineR |0.1.0 | 0| 0| 0| -|MPAgenomics |1.1.2 | 0| 0| 2| -|NSA |0.0.32 | 0| 0| 6| -|pbmcapply |1.2.1 | 0| 0| 0| -|PECA |1.10.0 | 0| 0| 1| -|PSCBS |0.62.0 | 0| 0| 0| -|PureCN |1.2.3 | 0| 0| 1| -|QDNAseq |1.10.0 | 0| 0| 0| -|Repitools |1.20.0 | 0| 0| 2| -|R.filesets |2.11.0 | 0| 0| 0| -|TIN |1.6.0 | 0| 0| 2| -|vesselr |0.2.1 | 0| 0| 0| -|warbleR |1.1.6 | 0| 0| 0| +32 packages + +|package |version | errors| warnings| notes| +|:--------------------|:----------|------:|--------:|-----:| +|ACNE |0.8.1 | 0| 0| 0| +|aroma.affymetrix |3.1.0 | 0| 0| 0| +|aroma.cn |1.6.1 | 0| 0| 0| +|aroma.core |3.1.0 | 0| 0| 1| +|calmate |0.12.1 | 0| 0| 0| +|doFuture |0.5.0 | 0| 0| 0| +|easyml |0.1.0 | 0| 0| 0| +|fiery |0.2.3 | 0| 0| 0| +|future.BatchJobs |0.14.1 | 0| 0| 0| +|future.batchtools |0.5.0 | 0| 0| 0| +|future |1.5.0 | 0| 0| 0| +|GeneBreak |1.6.0 | 0| 0| 1| +|googleComputeEngineR |0.1.0 | 0| 0| 0| +|kernelboot |0.1.1 | 0| 0| 0| +|MPAgenomics |1.1.2 | 0| 0| 2| +|NSA |0.0.32 | 0| 0| 6| +|origami |0.8.0 | 0| 0| 0| +|pbmcapply |1.2.2 | 0| 0| 0| +|PeakSegDP |2017.06.20 | 0| 0| 0| +|PeakSegOptimal |2017.06.20 | 0| 0| 1| +|PECA |1.12.0 | 0| 0| 1| +|penaltyLearning |2017.06.14 | 0| 0| 0| +|PSCBS |0.63.0 | 0| 0| 0| +|PureCN |1.6.3 | 0| 0| 1| +|QDNAseq |1.12.0 | 0| 1| 0| +|Repitools |1.22.0 | 0| 0| 3| +|R.filesets |2.11.0 | 0| 0| 0| +|sperrorest |2.0.0 | 0| 0| 0| +|startR |0.0.1 | 0| 0| 0| +|TIN |1.8.0 | 0| 0| 2| +|vesselr |0.2.1 | 0| 0| 0| +|warbleR |1.1.8 | 0| 0| 0| ## ACNE (0.8.1) Maintainer: Henrik Bengtsson @@ -70,7 +79,13 @@ Bug reports: https://github.com/HenrikBengtsson/aroma.cn/issues Maintainer: Henrik Bengtsson Bug reports: https://github.com/HenrikBengtsson/aroma.core/issues -0 errors | 0 warnings | 0 notes +0 errors | 0 warnings | 1 note + +``` +checking package dependencies ... NOTE +Packages suggested but not available for checking: + ‘expectile’ ‘HaarSeg’ ‘mpcbs’ +``` ## calmate (0.12.1) Maintainer: Henrik Bengtsson @@ -84,25 +99,37 @@ Bug reports: https://github.com/HenrikBengtsson/doFuture/issues 0 errors | 0 warnings | 0 notes -## fiery (0.2.2) +## easyml (0.1.0) +Maintainer: Woo-Young Ahn +Bug reports: https://github.com/CCS-Lab/easyml/issues + +0 errors | 0 warnings | 0 notes + +## fiery (0.2.3) Maintainer: Thomas Lin Pedersen Bug reports: https://github.com/thomasp85/fiery/issues 0 errors | 0 warnings | 0 notes -## future.BatchJobs (0.14.0) +## future.BatchJobs (0.14.1) Maintainer: Henrik Bengtsson Bug reports: https://github.com/HenrikBengtsson/future.BatchJobs/issues 0 errors | 0 warnings | 0 notes -## future (1.4.0) +## future.batchtools (0.5.0) +Maintainer: Henrik Bengtsson +Bug reports: https://github.com/HenrikBengtsson/future.batchtools/issues + +0 errors | 0 warnings | 0 notes + +## future (1.5.0) Maintainer: Henrik Bengtsson Bug reports: https://github.com/HenrikBengtsson/future/issues 0 errors | 0 warnings | 0 notes -## GeneBreak (1.4.0) +## GeneBreak (1.6.0) Maintainer: Evert van den Broek 0 errors | 0 warnings | 1 note @@ -131,6 +158,12 @@ Bug reports: https://github.com/cloudyr/googleComputeEngineR/issues 0 errors | 0 warnings | 0 notes +## kernelboot (0.1.1) +Maintainer: Tymoteusz Wolodzko +Bug reports: https://github.com/twolodzko/kernelboot/issues + +0 errors | 0 warnings | 0 notes + ## MPAgenomics (1.1.2) Maintainer: Samuel Blanck @@ -248,13 +281,41 @@ Rd file 'NSANormalization.Rd': These lines will be truncated in the PDF manual. ``` -## pbmcapply (1.2.1) +## origami (0.8.0) +Maintainer: Jeremy Coyle + +0 errors | 0 warnings | 0 notes + +## pbmcapply (1.2.2) Maintainer: Kevin kuang Bug reports: https://github.com/kvnkuang/pbmcapply/issues 0 errors | 0 warnings | 0 notes -## PECA (1.10.0) +## PeakSegDP (2017.06.20) +Maintainer: Toby Dylan Hocking + +0 errors | 0 warnings | 0 notes + +## PeakSegOptimal (2017.06.20) +Maintainer: Toby Dylan Hocking + +0 errors | 0 warnings | 1 note + +``` +checking compiled code ... NOTE +File ‘PeakSegOptimal/libs/PeakSegOptimal.so’: + Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C) + Objects: ‘PeakSegFPOPLog.o’, ‘PeakSegPDPALog.o’, + ‘funPieceListLog.o’ + +Compiled code should not call entry points which might terminate R nor +write to stdout/stderr instead of to the console, nor the system RNG. + +See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. +``` + +## PECA (1.12.0) Maintainer: Tomi Suomi 0 errors | 0 warnings | 1 note @@ -268,51 +329,49 @@ Rd file 'PECA.Rd': These lines will be truncated in the PDF manual. ``` -## PSCBS (0.62.0) +## penaltyLearning (2017.06.14) +Maintainer: Toby Dylan Hocking + +0 errors | 0 warnings | 0 notes + +## PSCBS (0.63.0) Maintainer: Henrik Bengtsson Bug reports: https://github.com/HenrikBengtsson/PSCBS/issues 0 errors | 0 warnings | 0 notes -## PureCN (1.2.3) +## PureCN (1.6.3) Maintainer: Markus Riester 0 errors | 0 warnings | 1 note ``` -checking R code for possible problems ... NOTE -Found the following calls to data() loading into the global environment: -File ‘PureCN/R/bootstrapResults.R’: - data(purecn.example.output) -File ‘PureCN/R/callAlterations.R’: - data(purecn.example.output) - data(purecn.example.output) -File ‘PureCN/R/callLOH.R’: - data(purecn.example.output) -File ‘PureCN/R/createCurationFile.R’: - data(purecn.example.output) -File ‘PureCN/R/curateResults.R’: - data(purecn.example.output) - data(purecn.example.output) -File ‘PureCN/R/plotAbs.R’: - data(purecn.example.output) -File ‘PureCN/R/predictSomatic.R’: - data(purecn.example.output) -File ‘PureCN/R/readCurationFile.R’: - data(purecn.example.output) -See section ‘Good practice’ in ‘?data’. +checking installed package size ... NOTE + installed size is 5.6Mb + sub-directories of 1Mb or more: + doc 1.6Mb + extdata 2.7Mb ``` -## QDNAseq (1.10.0) +## QDNAseq (1.12.0) Maintainer: Daoud Sie Bug reports: https://github.com/ccagc/QDNAseq/issues -0 errors | 0 warnings | 0 notes +0 errors | 1 warning | 0 notes + +``` +checking for missing documentation entries ... WARNING +Undocumented code objects: + ‘exportVCF’ +All user-level objects in a package should have documentation entries. +See chapter ‘Writing R documentation files’ in the ‘Writing R +Extensions’ manual. +``` -## Repitools (1.20.0) +## Repitools (1.22.0) Maintainer: Mark Robinson -0 errors | 0 warnings | 2 notes +0 errors | 0 warnings | 3 notes ``` checking R code for possible problems ... NOTE @@ -360,6 +419,15 @@ Rd file 'writeWig.Rd': writeWig(rs, seq.len = NULL, design=NULL, sample=20, drop.zero=TRUE, normalize=TRUE, verbose=TRUE) These lines will be truncated in the PDF manual. + +checking compiled code ... NOTE +File ‘Repitools/libs/Repitools.so’: + Found no call to: ‘R_useDynamicSymbols’ + +It is good practice to register native routines and to disable symbol +search. + +See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. ``` ## R.filesets (2.11.0) @@ -368,7 +436,19 @@ Bug reports: https://github.com/HenrikBengtsson/R.filesets/issues 0 errors | 0 warnings | 0 notes -## TIN (1.6.0) +## sperrorest (2.0.0) +Maintainer: Alexander Brenning +Bug reports: https://github.com/pat-s/sperrorest/issues + +0 errors | 0 warnings | 0 notes + +## startR (0.0.1) +Maintainer: Nicolau Manubens +Bug reports: https://earth.bsc.es/gitlab/es/startR/issues + +0 errors | 0 warnings | 0 notes + +## TIN (1.8.0) Maintainer: Bjarne Johannessen 0 errors | 0 warnings | 2 notes @@ -407,7 +487,7 @@ Maintainer: Jordan D. Dworkin 0 errors | 0 warnings | 0 notes -## warbleR (1.1.6) +## warbleR (1.1.8) Maintainer: Marcelo Araya-Salas Bug reports: https://github.com/maRce10/warbleR/issues diff --git a/revdep/checks.rds b/revdep/checks.rds index b3b319894e1ad50093a8cc8c71ee6065d5ee0943..9ff45520077f7e2b39d20351b55deab8da1a49ae 100644 GIT binary patch literal 9609 zcmV;4C3e~$iwFP!000001MPjybL2*rUrXI;jkvS3GckK{gkzo2v)(4hB>2%El3LAi zlSOu`VyA)@gLx;4vz5E z5st7gvwkl>02B&E777XVgsBdRh0kBUeEHtXmk*gQ|7PXJjT`UYxOofy-o(S7!XG%f z@rN5XZsPI#@c)nD|99Z(2k`rkPskZdgwG>#&$;hxk=328?GHD$?r-dDuT`G?$;C$x zzkGOqodkZAU2Ke^tn$FkzuDfdTzZ#9l`DV3qAx%1JDa{gR@;m>apL)*}9#i+UsP;QQuVrXp{;868v~9uMD0H68a`{Tps?S@{Ti3(^x#(+#LDoI2+(2n+hgJ+1%?L9d7zU zWHZ8d3vX4fy|?9j)RG1l&pZ}yx?|>^3Rzv}M4oJJ zZOLCJ;G;^r<#H___%dN43sRw4X{su>OS^#b(+bGs@?+s?z1g?j#1L;UyM3(~XZg5*Zu z3(%qhbboOH;t8u4p_Sr+st`?EqrV<5B1G@N|M>F1lGO$|A)2cMc)=o%MJ`AHaU6#n zy?TAPa;$va`T_g)o8RI2 zr<5jrHqvKd><$DR+n4C)OGq@Z_IsILRHnBVkZG3&A-JdY0{y7UIU}3ATRug95WBfW*{@EycmD<;K>N85Y*Y6wHmp}U)vn| zESb~`&U^CStlaE4_j0+3e|8W5efM&6&_r%zMXsmVbQMwAP+m&TXhb~lkoFVKPRV09 zg|h*kI1C?{_Lu%p0r}t=i`ag`=;^FDJS>UBZ;y4WFA{Zn_wVwk(+P38ry@ttn8L>} zQk-!32}{u@XB313B;pZ?I63pxbE?V7FpJz2zmj@v=tsUhM7(dm`FnWn+i!li^y_iL zJl{zvgeqCJc!E*SRpk@H?d^6n{qPYSwfEXULN+3 z_j-q9=m*TPZ=61DVw`f-x}NswFJ98*lpJ~?k38A2B~L^ajd{T9I<<#2othi)%$p>e zBhE(w>+vwoQg#@Ppw=h#UE816JzBMF(*c3QxAjq`-$a(`>UBNE>fY-~2wcs?*W?S3 zCGYD~P9CS{`tYBfvLs@`fb(>IprCFlLXNOmAk6tvQ#?>7S;ZJ{|5tA*G}-9mNKu>X zDNldZr(wndvLDdM1qVvVQ)eJgpZMTb>RX*38E-20o9+faj1rQ`UF??cChV)sPuN}J(jbt}n{R&jmi}OO z;&|-LcbU+i=uRB$Dg{f63n5F#+!OtK`4!IfVRe!LIt!$@;YL%>;TN~53xPixr{>!r zMF8o+=qn=P=R+V}fgT5p3Pv*c|Is6?pRV2!PIZEcvDG!GqDa95aNzMiV?;3J-rViy zA2H2br@P3Gbj--zFA{Kkq-T0~k+KLS4eo|C%4pz#=ff^gHsMu1cmsIa@4)Y&6GF+| zM~@yU20ucQ-O*UE5nO}6A)`_6l_DOg!O~DmvE+aLTX^QTgbsL?${ScMK7>ObT&kEQ z6m-;4?f=97)zo_ihb&1C4u)!!u-wZ$hNj2YKRpO&A_l&6 z&{H-AGw>sH!R0#|()jVkh@t|p(;VT2G9C?UpoVeBhc8|?ebKZhzS~xGa|~;OYYTC< zns$Y@?~fuH9PuQif&aA}|2Bp!bFvR|60m*>-urRDo7$sT*`szK^uiYwNXeUW0R2fH zjeMly1N$$Rl5yQ(EM=gVdN&sxHv;l|U|oPA#|Z}yV9^*seH+){EiRO`v66z>_OUNx zLrdt2E{#}P1Z0$Awc<12Jx!>)-x#U}s6PqqV1+QWhuX0~d0Z`!z^_R`sv~WCSksP^ zc|Jw2a|J-`)NLBbT3=ulHWz2Bs1-?0vydk+Fcj$$meT}2TY>1FpcRJc2-*>nH)Dg) zD3+{Zqq4b35W+CSBT8h6^x9y2g04M+6C;B}c!&c4rS`ZYlsZaiJceN?#ze7L{FQ~u zSSn5Ak1S>;mYPRlRS*^^ls}S4Jd$+kI4t}H%B~2VNVZ@!amNJL6cMl+>;hdA|BMkDd0N|0?}h4f z&sZ?Q$Kr$yS%S)?qX#$sHfLVSZm zrua6IZ)@HmkL6Tu*+hE_$Efm|<#10o7?jBZPfjk+qboz;pDwB3S*3-VhNk8;)pSF{ zwbx@NSkWL61A3rU25g!C z=%X}@12*%paNIEkntgF7(i~BY7#%erSN3XdxOK*OsmR_N*R#i31dL=&_ zSpX6&eN9Iyh*`B7%ZfuApjvroOIf)E+hP?>*cPd1!?sA}Mw~V9OE+UHsQQMq06DGO zmWV9Gqc#6Z0@50*BqA2-SrU^4-S5U>YV8+wTm-gO$3;9zM^DOV|_ol>q+OADnerkM7c<|@^+QKiL{(?UsCs;7lAu2xXHjU(mY zicno+RDNmqWL^eFKNUjUzCDXV>y@N)**;|^ zPS^#miOZF7tq6G?!B&84DPB5Ac{R;;pi5MDArr0GdpW4RIJbta{W`r2rukZJ8`reG zZQQbZWfRvr5AyNo+<6GLn#&4sU3*#o6lfLLJ{xA6%#PmHHkuvi+Gex=>CZBB7tAO( z9(EMAdvdvc16IIUt^QHoAL=TdA(8ajflQe8w>+c)EMq_%|Ip5ODKEjUrr;PWP< zwY3%t;Vu{Nvq^Goh{IX|xjnK;@(B&?F<8!f?z0r<^I4aNJfvU~)btxRF}si~(<9r& ztc{XcWiBp(@%400Yrr}JGryqR z2eUd*u?Na7Qe3<6l9~i7)^)+YDwM;_mrQ84)^d%%wKQ=*ED?UG2V!+lWSQ`;TC!?@ z+BV{R6J&QFYZAL(G<4<}=dqhp>Ci%xcGG$(fnjJ*c6mkHW>ZPX_1CmO7 zf|PnOq7A@`Tuo;B&GNB)e5UU(3-ipcSjpGGncqm?&gU1AvfodX0WPm$QxJy2nIQ31p8_gmpJcUoX}{*e!cyhb$~EuJ8(9b z><%VtpC}sQfTyb%623ee_j4qe;9B!G_ZQ?5GI$0=NM#_H@z zvH^WMI%y71Mzxz695Z^_XQPAT$_=?$x3l%o+1bj4;{MyRDUF08uhI8Hv7}J^NVD)2 z=CPvH-Qnsa@dM zVM9Lx$Bmr8)5(fV42F)XNIjmVoA3ilWpX;p?8quJ5~ji70b9qnRH~#2JQ9+Vqi4>F zOmp#Vk-7q9SIz=8>3qIjB*R5_{^QFfwB3lqwN&}Pc+Eqf^fUYmst*2?z~d)bnmI$i zPQz~_unx=4hjN*~WMwnsxQ}awaroYs7>SUZ ztF2<*s@Klj|us>$nF~Cdi48+hHW+ zaVXE7M4dm0_!&)7U(5^7+&<0{);p@o2JQ`4Y>oSO|6!4llzI8zXefLkIPY?!Q-n0XT1#qE~^jP-{+VXBk$xT{=QvaR2eaeI%Z z6pnVB4_^-6^8SU2z1LGV|Iq>EnMe9QBab~t`0UA97P?LpR4v)vx~;)nI&wFEd2qBR z*jM!y?0tQ=D$*6tkbZF4E=^{XcPp1#{MZ;mfim|gce8v)06Fq8`Dwq{J2`rO^b9{s z>1WJ%iR)3Bne2fL^4GnmII`LUA1xCs(OFydljy0@LPgYYYfR5reesSQ5rMxMqry)O zd8VHq>Y1W-qob8MqoY5HIIC{g>!~$sa#y_*j^BLH4?u(NB>MD;9|pq7z8*X7xHdp` z!eYN}3t>=-ow8D-|4Hk>r6&ERQjW(zX_ydFMK>@9y3PZ+83#1QZ=D+=X0AWj-K~tasyr^LKzE8z6srTWPb_n@q2`wP_IgG3|MsJ+7 ztH+W6`5pvIL#S`A3L>HBeKu;a`AO{zjDoizJ!QQhL$?w^U3J*U%-hX3qh;ZMdG=wU z%Y&B{E=$Lg;83I}p$*yi6^3XO%ESW$Jo20GI8tav3FBb@U}+eXucrz7s;RCAbi$Ph zEg)J7MM%?J+HGN$MAsH%z(zV9q{mcnn!Oqh1zU2Ll6D}Y#J507!KHRMDGZbJsx37~ zO`$ZEEmNtMFh#8}nf@{L6a1#qG=Bl^Ns{kvgEI6>FQWUCUeiPfg~GG|F`Q`uQE;UN zh|yC$YxL;gX)CrmgMfpJuJ$D_&9h@cpQRhmg!|KMm$t zj<#H3iHH$e1}%>hK47{3VtOSzdf#0ECH?QN5F_#nm(a4qgGv><^mf-ao%79TMTgDb zeGx_9?dA)DdPnh6F39CNQbo7ufan!xI%cTsh>j&PuYp0iyp+O&=(r%mvW`nBb^l#+ zF82jGE~soTyDcdo&$-v^|>>-B}CfzLR~~XkZ$a z124Q)`)uio--C5!7{VMwXE*f|Sc&UJZikF>+OeZ5QedwMEG&Rf%l8odG znP#vHMfWl>#xNnXkIdt4fGc5ltJp;#(l+c%>PKBbOK!+T^46h2D%r&=`y}J6v!s)z zV?pp7RLN!bnZYjn)V5OdkRr)__Ep9rmzfMK*4a`@Rb&<0#ijfERCL1b{Ii#BcI0`4 zx*)jt0MLP;^x{#Sj5ObeU~Yf1WWtlVy~wh7bNY_PaC6Pga!7>@IKXMB>7+*kHxF^_ z_eU~6N@Ew~;ApR(;ttr;;OL5!KVde{Lj!%zK>MxsP;-aL9%K<e(RULWejF%c-#)oCTXQmg9W1U*g_4Komjqo;LDrE zTKKjDj+CMR_R%jDu$I^Znsmr=9Vx=3TNshgGjAOX*Jm=0Ej4jt+Uagy&ec1R8UM#% z8Yif`I+c@qLerR;zUx*$#C3se=FQoM&f|9-VCPZC4zP^^#0kfxMXlpIB^O{0q&*AV zO#v|vCZjy>YX=1s#xh|exL!Z!uSIaiI_$I!vkG4cS1pXa_^_~Q7OiuqWDTuimj?M= z;1*+Xp*z&t;aYojb;rjv1(PLJO6HIG!XMd(q!`E<|Mffne;wWM`ep(u&J} zh~nXj%zj!jNYym0I*^=aTqQVXpXgXEQC}YbL=8TOGQ~REN)QsYVvLl9mY5kXME5*I zcE^BGGF_yIGZQl-n1CNcVjxA%U6R>1iSfc$R5nii<;>(=(mf9`@g1UPlad(zGchD0 z*D(Qr?rBLem!IJ0CY7aC&YmVnD3PAY!l_yh-@|x)JoT!IMofg9MD1L?hqjfqvR> zKR;INm#4A?W|35j$hre>@mG}yzsT14scfaFyyuqdV8-A4}P;!)UY($dYKBA|GDgf?2;{K2Z(jYj>`i$y)y`?dy3g}0nS|0 z`E=6>oNUX)x^MumX(fgepcRuv`{P8hQ_O<2i9gdT;i-@_F&>@!hp%8g78si zFsh2W$ifiZk*_r%TElX}Z+Ku5hK_J)fKTW|Y30^}{!QjhH;q@~kNk+SGC0z4#f?h~!xL0j5s5y(-%$7RLK@!j_UA z^DdGdjS`;4%G5wJN0?^R&~+hOA8i2K!6oh7+r6Xx1s9ql;lWFF6*X`*PE%Zcr}8&QqZWZvepOF(xr79B$nPgcLOqGS1BUJ(*tOj&Cn5l;h zcsiEJO?s1igu-a1H+evYL53#W#gQ5!35Md4Vp`T93tx0QI{D6Fcv!-w1<@?30 zawCLUkouph?r9l;DZjsp`Nm$z9uimv&ayg|UVqUK8L`JsZOqSm^2uDLFGNhG%-}u= z(ubC^_5kd>s;p8WXX^p#@W=Ac&V%(D>)*5)a7b`~O`r^j97wMwS>z8_?;}5>grD!C z;+k7HnpoYgy#+%ffw$HJ8V)=P-gog(nfvAS?8|V!{Jv6EH#&2q83k|OyKr*N#S`e? zlutaRwKF!n zsCp|JIk@}FF7`gi`&cey*+qvM-gibcR^zesoI4n45W1fQU&UB0r{2GLi^Tc)STJFi zbe|@Aw+!peyQ?^o#YAY((s|`nT{Q_xoIt(cdctGpYnE`s#5~LJR4=-#M_J8t2g@{h zKV38#dY*_(f94Yx=-M5)MuYuDITci+S_rqw@bP9PX6m6x%O_@7o+Em#3--M^^~J~djWV( z5gO+GghkR{eoW0ZXP~b=0ncdT4U4Gbv8q`8yhf~Inr?_q5zAHtS8I+i6%SPIytm_Q zm1OCY;al3&q>(HYwYi?M^z$Phd^MVpm(W8DpvNGOBXz|I^_3?B;W|vr-7N`vs&wqA zhftmZI@p9GIT$#p7oywhW>tVde4OoEfFAztvTV2=3Q(i8$*LyTRCxB^09zUPjDvp& zzKj6p@A2RbeZ$93l4JwFT}Uq`;&mBdZ@zwBlg+!l*P8ou5fcIxkuU!yclcl&qVpEZ zj-qh+j(D_z+eLabQQq%n5sDb9Ot83LVNB%PI!mj^U2vgPAwNzU=9i@djMGQy;RTOA zN58t^d{Q&^L)Wq`7Co!3rfUd*(foD@WBKax7-kJhz>^agP#iUiHM`8XDS)2D zzcj#`n6*Rz2~5?Fp)GOrYPF>S24QstYEv02^8LCzNmw8=gtuswRv>xHv?FD@b=qNh z7IY`Yi1g zG&KZL-yr4OPcDww2$7c8s8$$8q1q8LrBCgklsdJ-(Aw0F4m10=4M;xixgB$j610LT z=>SgFd4@8qzK}P{M_JZ`HaL17_f&>h;mXNy%WJ~&07ea3kT9hKEpU_qEDxZizXb(a z^p{7_j%^D7tvJggn8ggsBZTcC3e{a6qolVD=HB8KFlv@;7?Y}dPUJ2}W`eAo5~Rif z1YHP%x&RQWlT!0gi&>^}eyNOm>&c`>>Wi;pg;K8&IXSe+bWordf2t%`W{M(-v(qTm z^iiNr&9yX?T|SXiPanmam*#pF(>vw-f|&`MY96Par#W|eCbWViTw^OHmnI?M3`@|xk9iYsm8droSjmX^Zwh4ayHuMN>}B23c|)qnz$_BWG|r;y3wZr z7349MCjw8NfRTt;5Ew})zr0rSr6r^%F5BMPgysVCIwwZ{zP?)(pKWK``6w5k&z@*0 z`J)yeU6udu#b=5{q94Dt*E>4Y$3LdHG{B+xIw`|?b=}Qr(&s$MX>w_Rc}UF*9)FtQ z4DGxnshEU;X}O`#l8GsEC?9m>?#`d_f#J$e^z{K=S39w3tYI1X1MJ)O!5cW$7yf+2 z`6ytx^?H`F!)OG|KQVNlGSq|t=c#Fqm&bc@%^f&ECh&jM-!ruWsTtAGH)X|x(4}!4 z7}`J3+mIg|>kB`c-k034SZ=$mj%T(X)+|w*$m$yEy+kz;W_LziX0bEf?DzB8kD$|E zv`U{gD!ssrR#)ZaRv~>TUb$A9P2}|X58)n*a3U7y+l;{8_{0ALy=Bt|{r>;}cyHFn literal 8620 zcmV;dAyeKTiwFP!000001MOYSj~vH!r$maf)^;L81`Gp%QJ{@**Vyfy<(DLiYjbyY zNl77>s~rk5pvZJhcg;+5yStkGvAd%~qEk)=atq>|a?dgUM)FVi5FkiS2?FF2JMYy; zcTZ2x?sRvx=!BxJo&NmQtM^{LdiA>M)h|{qUApx8rOTHuUwZvA9=-#AuE2l4yL9O? z9={3yy$%1p23OyL-#Y$q5qkHw`& zRwQ}1Hn#3S#a=Jmc_W~H_V}CX;+v{+>hx+njT7c;+EP~?eaoZ4IHhBzU$eRA(L|rV zo_wi}t~hwLRIu&QxJ>7FLwJA0BmbEjjCer+ZbjdB}|60xzj(`-*n?Rom0IlcxzrP z?^&qxe}otB@7`CU6C__&4_})9osq|7&0H2mJc_kWp3*3AgK?bcH&2kJ8O~n`X)-C% z)Zd(NpKVTtn-L3n>?S;NS-h$A3@)BHEZnpw%s!4qb*&?Dvf1m2U(4g;lH78&!Uvv3 zEKa>7mQtFj%2h2(pSnQ;|FK9n`(ZkMh6F`PT&;g4wOf&8C9a=6kd<3W+&i*n&x$k_ z8lDLSy1Rq|(TMxhqNCB&XG!FqRV&lm<;Tj3b<^4s?OiI?vw#05`1jA9E7p}VQ=imP zrgELWQLJSZ>&DWGWe3#?^(}q7tVmndoq~nh|Mg2!q=)qt$qv3zpk)>4*76F(BUY_K zEBOOuC7QKHg9ju0_w_5$M-7w+YV(a6EvrUbOQ?}eJs&*6Y8`r0-7Q_d+OxK96wJ{5 zf4qtRzJ3jQP)CDQUA|EtliirZAEZgT$Oe5&-!5GTNBefc0)4jrf1w-Gb$K-vXzeMm zipJ!T8<0chK-mm*C=nOK_io=GLlwL#En2J4qU^QJk;|fKweq|n?#*k?4eLgxIs89g zlI7W}qdB4?ucq2`H7*;;rnpNJd-5?K#tX(}<;P0*u_L=x9GLy^H}LQ8{=f%jmdu+Zp7&E`Ree?zgJQ}R~=qMM5x(ci7J4^$q})+!^nt71cVv8 zLywU#;_&0g#Ih`M@Z{@;NDTGD-tG!H)qB8@Yii4iWFSU;Qn- z_S>(1)A;o;VvcJk2tgeOIk6LfYEpb=z0bqxLFx}#B-nGvK_BAt3Roc(MNAlV5PujB z05`6WTEK(?6l&Z7W@u68c^V6Dd>V)+m{Wc;Ch+hHja&+_@m+WuSWmE$M88iIS4r%w z^x+K`yetCj1#N)GT^}3J0~iLcUW<|XYwP41VBn8N5XTY(4`b)rTItO+aXs-SmJD|j zPNqDK$idFz{lVc*f1iw8k6Gr8(}#78Q`WRzP5bnt$22-7`;N~8M|5n_{WuLK+~ZZ9 z+MS9{&GvZeOry;)=VOocxgVwp+YiQ2>!a$f?fX@amMvRvCUCU(=p_x?26c3)s$Q?A zTK(yO`YH3su15nKI=on%T0?Pq-vu`aKiF0Eb>Dt`xHDz}_g#B#l(q#rkq^i|Tq+cV zAHCq^*Zw=}?VuVAyI&gwNnnVndcUlnyY9K*)kV|mXhyF`>_zHE>^iZj=ZWVPW5ru& zT)`|KSq?jKZ5D%Fmgi{NVwU6=dWWVhK=e53N*wUh5s)rH4?RX>MpF3i?p>^(s@?&9gN2H*)itPMoPfo);PC-tBxbTZ zx;{w9V+OYz&4KtjvLl%=a{aRiIx68w?4KnpKuv?YJ`GapSb|KOF2o6oRS=5TOk0_@snF z?vi^n;K9`AY5cPqm{O%e;dhwD^uQ7shCBs*Vpf6V!TotvdGB+=!wS$33ywF9j>93oYg2(JysC+ONEIMF&tVh3>mpdgP6LSN&Eh7%ZuVhjt5 z#a~gVh<(vW{D@-aVqaO*Oa{$>Lh&Pr#3Mncikrb-pzMP18T{(1;Blc6UuR_P<2uoh z!a)Aj41%mZM#UvhqQw1jV;@G&C+tgd4;l=dgX434%>VMiV5fBHYR~FfH}e3<{jXG< z0AnT)k_~+K#8q%(+`#ry2X4tRcd!9%ltPWO;eQtVD91J)?+gYD z0}_S6$B`wJyehm=41ml;M)309!Hx~y06w-O8ZL=B1{vrJq$k=~fo})EA!zo2 zLnBAr+jQIrP3gO@^iG{Lutcw6xfc?{K1BHCFxMs=v`3HOx1piJgD7#zu?Dd(bi!hm3nXAb4@hOmX2~O~Duy&`yw=n=kJAYYWI!j-Au5!R z$EkzSqcjl}rb$A9ca9R*m4C<>Ik-u{2;t(8O<7G~B-ngtjDbDP`T0Ny2+0_6&*P`~ zDhN7Y>Z$LbCA!_W_PDgc|yINz!5HlCHX?YH|92s{-2~tm?nEP zp#zr07Q8SsK*SEN`pLn;VZ7|4)DJy2_i$|46ACl|wR7dp-mNTa=7ISVKx%=r6Ge0y zKjjXus#)oYMIfJom!O`gpkw4F0Ik_7&+OnZ)>ptGKaab`+jH=A;%F*W^H-)unF+L#%BsOLRk3k7+!N7p zX|mqETr)m>uzQzS58NnDEYBUHP2|Ivdn}QC+o|h$!axm0Slp4F$j`RPP4FRlD=Yb{ z^+#XQr0=oVj@%IMVQm(gzS{W7B;u!LA>$-cfK9`3Wy0Ep^)Q?R8v_i6Hp8l-Z235M0_?f02H(2DILooX4z^qRfje}mHN<@vZ4grV&x)iis7P{CILJBD8Ny;-DxqI&FHFt;q(Hvs%1hOs;-eTF3?>gWn7@V?aP?8!Ci~w zf<|JXI!m>Z_T^mEOxl<5^|g~g_n6BEUAkzJW=grJQJN{`qGoBJl;s+xIni9yG)+`# zxyEUrqzjv;fif;`pk{?5^x%R}WbIk^MTfZq?Ba-_4*WTD$D{+ilf~`(&Pcb$4l3{v zKl8DV0!&*ZKsqW%M24RPeb8H<$K3C#J{_`3TVB)9D#CSfh`nidQKkHb;Lp+ji%OVp z0#HbC0_8GIz)&@oX$6LgTBacw?!>#(td7tNE#jOnN{!4z>UlFw!X$o&WM`5rd_k)- z8To`oLmn3}3g6vo2WMy)M*IvOQE*QJ28ea%L%DJ(T+{da2Rm(EkLA==1tEk~cZwW8 zeJmyg#TrCte&hLi1?_Cwr_99(yTH|PxgxF+C9fjb2yi9Ejf0dI(`*L1Ky?>7(Tct2 zgPMzTE7;1f(@ik-*J{(aTK1-Ki|&<4T;n{*#-j`8A(#@E5#TC$8UGY$6xci)=0#?v z-Bt?C40NT~%zyeb4BZ7Yio(N=!gSAW40A_Jv5Ak%*hU&fC!h-{Hlqz4!Ir7cqpR)3 zI2)-gAh+lDVrT!HV&=V7@67!_4PQXg4Og+TU90 zxF3cHKi2~>Iw&$scvq4v8=$sATx^2O4rC3(cBF1|4co-DRB4INUxZS7oRaCSVO&kE zso^}B2fqktz`ZFWny>;IbMaE3=9a}Is1}bwNT71Z^Xjh4pELfXf3QR3gl>|3>?1Sg zg~-`KL{1?GkeOb3b}=9+#V1Ii7bD65tccZQy5B4wi^u2s4!tl>|HdoX8aVwMsN326 zB2x7Gi8R2)HEa?>Q#dySA^6EsXDi5K3#2gX3lQd)SP>-^l7BHI>hmK}icdfnh)^WdR0V*2jJUV>%`{X_O*y%0txTb*}egVt;m(xnlYY-YXp-BS~gAO zLP1=(c)0g~WGfU+=aJa0lScw4E4-5VBUb;6oq#lsQ_vT3@AxFJ#NmCBHX;R{@gU)r zP0LwY*DJEL!rS8I&2Z@3(2l(YJ0ZN4-M=)Ke6zR@%guj!NeNkNCHKuL^J*&4kDhYh zC4&_I-b>)G731;!G)b+ITa|U>%He*0F73#cwbd)+;{E)cW%91-xBqK-V~%BK20V>1 zMai7?e!s$a<9pB0{}9_0tYWr`?SoGrJz59PNA?YD`@znm!9JK@7AM=+Fk^KBe#3U2 zktd`sSV{dDbaP|iZYq91i-sg9V$%hSO9eRU?|EZZ0qAH1v%vueOEAElIx+W6m;B^p(%#fr8b}Tq?!JokK z#N8D!e1nmotkUMu<`7(4@Z4#5Bw219!RQdJuRsmqF*~r7%WZM7z+-J51!>vw63okt zgQulH8Wi#9$%hT;ix`;mek$q1+YNCLfz@GE%>r4d!~T>d#iz-b3vXsu0aWL;lPTlm90%2S67Tt@CWR_wC-C#i2+ zfmiN1uUG8{Vbig_`N`hF4vc>n?DeSbmQ85M(WFEf#Xso19#vglO-)%7+lL%+43?m; zg`K7qsnh$e@5NU7<;1clmD?H}u@HF6=k~A%MYvH^g!tcT?DTN&dyTqHOdhHdD1m*Y z2?hx_;*i!77&WDLItv}X-WgnJ!al?g`HqTkOv}59_HL*jVC?PgHHJa` zdJwS}b=$f}r(BxQ9HOOCfS;RbyD7|q>Y9S|*jVLJa-a{2e87J)8pW((dhd21yH-3W(3br=3&GVd%YJnGOVPC$33{kkg% z^9IubM02JEM9!5KAiABZ=@tij4_dL+8hRXDbh!az;R7}E1}xclD89qh-z`#nwUvvN zyDLO}32#=wg{$HVD|x#iA3x43&#_DPM6p+(W(5%&&hME!Hz z1)M^1vEBE-*5V4g@ILGh)vyH^DN0}tmJi;m>z8*(TdJu^kL4oV3;ioZT&9Bp#gU~* zZ9p^8%*Uz#YP+LS)|;Eh?u_VygWUnu0Ec0bj`*E9-5sz+yRGJ-_4Yg6u)9M+%5YaV z1$4*m#7(?KmZL3KSQLi{ErOPZ5g)S5f6={?nRee@0fqM8T_IZKmoA}YhX<9)x3}v~ zHl6cLw~7wM-+d8z-)(0zY5NCZBNycSHd016=zyrH+A3x!?TCscGN*tY(R#F?fhIDIVFDuXbM0X~^ z%y%-c8#PQrGw|G7HP4o=_&q!ezlIhcscjm%wqJR_--UqZfExt_WW4OyXDW+d;Y0Ua zpsD79+Gw2OjJ$fVOGWq6c!FU`U!j&_9qQj3NP$Mn&K_!J8Hu%G&jwVavQLR z`!^=jKK1M@#IZXN+g#WG?y+~UGe~gj$XRf7MT(y=>o4GjK4+->R&%JC!($>0iq~F9~7KX>|;7pQM2sIcWDvK>t zV3~>Kn+HB$EXKmO9dM)&1u&0(u7b719@3~oma9k+W~;!6e3r6eZ?ry_s-w}wjajF= zemNI!-J$&-jj5fW?&?&`iUp$4Gkw>Meu(P=S64NjvZj@1`tLZSC_Yr z?-X2s1(4<}a5n{n+?$TGglQcVkQ>X0jp2IroWB;q8RM|CHq0n|DO|NQ_VUBRvRO3F zoq{zqid`7wcY&La#bec>Ru0$NH&=UdNE0wwqDh@bZo)ou$7W*{=1>bvH%h8%n#Kvu zrC28knGSG}a`1#yHXHFuML3RRLvxi;iC}j^l*dMfXCcXhV5lCr?uDpzYD6p-A|n1k zFm|BRn$4v*!{t9j@^D3@4J#O=a(*)vNX}A~5uCG6RIHZBuMYqs2OmV5VwJGO^NCzB zMv6*H^b8lGdLAOWW56hwE|SNYiJlQmz>gszkRs+TiL_Njd*LfGjg|UxM&u$fqIw>p z<2yvnCM6;KU&oM$SjPkas;4FSTz-O|n`C-3F?*UIp+tBlOXoP-6ALCqW-=uwk)+HK zKdQ*NWM;+GXi^cx5$FQ`Ds>QtXCeNeOs=i3kmA2@q{Sm zkbv=mXym&%P)}>_XUCHL;#5dr9!W|>)E#(>zp_O5MYb-^0Vh-)4}_NEfz)F>l3FP0 z=g+f2sGy)pDUvvrnjj9vU!etp4k7Br`Q>u;STe8NAOGv}sfa|vKDsNW(>F;;RD6Fm ziY+%>C-@VDX|fJxYfJ+-_SfM>aCnIueuji>Z}ob(q8FZ#=eO}3I25x)B{UKf{N+t~ z!FK~$iaM966xE3>YWDflqfZa|J5TrbzF5g?SeR|yq=LnNHajERq-Wg#V(p1#a}Q3h z4LxcfW7;`@)7MlYx?~C`TOuPJ9KdU;5yJ`4iusl@GAXXfP7{%ep&gYq{;9-@R{SDL z6iw^M%JT@-Q$rh)$s@<|=#U|sr0_&T#w=BE#a_Lpjn9P9#HXQbu@M@sYisKyuyDye za2(*rG73%LPjyBFPvF2u`1Kb#+C=;1S?L5pp!y_;iJ}YTvqis^?h(hzEpr{4U3sF;en~|Td_?&d_v_KD@qIcH<55u3$MT* z@e!jjdkWt`R+EVf;!^V5wpX{-Zy;$xq+qw=?Q0;`&$l*ie*wggZRl9Rq$Jz#-rag{ z9TOqgd+unYGo`5pp-+QdP{Zw8Xtrb+Mp+_}qtYGC*`o!-1QxL!uDLq4WcEoick> zv`@?rcj=Th(jNUTk{ygAo`%xYfS3cD`=O@mOh_MX0NlYP?cCYEru+pP#1V1tvAl{c zaMkAy+rBnRJrC}mGIu;lP_8`-zI4@01wbj;Q8 znQ(+3aekbJ!lE=K-qR4+Ggcz6(nmiL!!fJ{9CIlguuut&K(R3!@W!nkHtXK{aJmgY zpkLsusatsYR(`7}1V8l>_e0q|HBp%2`>U8=>yhXofo0$<%VXj7=lzgYd+gLE{IoBg z%yjxJ4yn)?OfW2bXrXJj!OqLd$|hv>ZetsMU;Mdod%eQ?*A)W}3HDF~(twD8^lFp_ z?r8NE@-v9|={7c8eG5kut6P<~U}zNMt#yz3Lx+O*oj+9MesMi}6Ydw^mrd0UPAp+Y z!P|GvtgPkY3G{E$C!T4wb8UL64b=wl_4e9ayDdg|8=AwwQhjaa%7G0Z!E1r7=y(^( zmSb9x1p^f(;qb;Nxt94gr5+BQMd5$N(A5>_Ed&CakXv{iJ1K|7?l>rD^Vx&Fqiv~> zfd%7de;bbED0%yi?5${EVcPUYVw zYX9aX66a=P!HAvHed_346V~f@S8*hZiO@jOS>UB&Ie2d^k%RZh56yehlk z<)5MG zZXyv9@wUnU=y3bDU;RcF@^(}+cOe~O3@AwU&v@`D+U%Nhm9$@h-&xvX(UbB@jhX-$ zDQbr>5wAAK(DR!;9vwkvbx1vyBrR(-zl5zWfSMrM7~pxxS|Wf3CUP5>mN;r9L}P%V zUtZl*SI6>Pk~WVb=7}7}Eu_*4B$G@#Qf8&o4$CpX8!e?)AQNp3+SNzTT5g4st-EX~ zC!I309Zo@qM=toyI|22kv0FQ>s!X(vlMmT|CHk75x1d0&escun*tP&r4W~JRo+#TK!EXMOT$+W1B+gIKkyDd^IysL=Q+EC&B{elk?BkfvBg&@^ ziEmePlY!(MAvFhR@%E1=l5mABnOyk5jk9+Y*A`FPL1C4q?<}0Rvr@UG4UI9TD5v=? zv5C#ok8sD5xxsC=Wr>7a%}7Tov*UG%Nw$ggP?WJBoU9dID#GH6Gw0PW&(c-$1m~y% zFo*jOrHdBtN!IUPL{<{fLl*gIB6r$RuRW@K?IrK-2yA#Yqg(4A^T+{{HXhT+ zW*#Ry5uMVF0rhB1?on|Pz65&`o(tqH}K*DB)XK0UJ8RΝ1?Kf=!5%#7ZdrY{ ztS#$Kraq5<{gSq=tEE1wD*x}*XNJTdsK>AD^bhvc@!Mj1ZHs1e@HOk@bvvU;o%1N8 z$)+CWxYI8<{6UJd|Fo<|E{mqRl##e)iS0H&=0nYgtE1v8Z(*mk3*G#&y72um=VOoc zxgVwp+YiRT)g#T-$A>#&SqAtqI(~mJ*wIk=rnIWgVw+M$n%sVIb{D?VK2vl14b6Wr yDtt63+1I)DQkKM(T&^g%OyBj^KkEEDaE}G}`5ZKPP8BZw?tcOE6pS>3=>Px}BdxOl diff --git a/revdep/problems.md b/revdep/problems.md index e04120d..0e2f042 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -4,24 +4,40 @@ |setting |value | |:--------|:----------------------------| -|version |R version 3.3.3 (2017-03-06) | +|version |R version 3.4.0 (2017-04-21) | |system |x86_64, linux-gnu | |ui |X11 | |language |en | |collate |en_US.UTF-8 | |tz |America/Los_Angeles | -|date |2017-04-16 | +|date |2017-06-29 | ## Packages -|package |* |version |date |source | -|:-------|:--|:-------|:----------|:-------------| -|globals | |0.9.0 |2017-03-10 |cran (@0.9.0) | +|package |* |version |date |source | +|:-------|:--|:-------|:----------|:--------------| +|globals | |0.10.0 |2017-04-17 |cran (@0.10.0) | # Check results -0 packages with problems +1 packages with problems +|package |version | errors| warnings| notes| +|:-------|:-------|------:|--------:|-----:| +|QDNAseq |1.12.0 | 0| 1| 0| +## QDNAseq (1.12.0) +Maintainer: Daoud Sie +Bug reports: https://github.com/ccagc/QDNAseq/issues +0 errors | 1 warning | 0 notes + +``` +checking for missing documentation entries ... WARNING +Undocumented code objects: + ‘exportVCF’ +All user-level objects in a package should have documentation entries. +See chapter ‘Writing R documentation files’ in the ‘Writing R +Extensions’ manual. +``` diff --git a/revdep/timing.md b/revdep/timing.md index 0800465..6b99a67 100644 --- a/revdep/timing.md +++ b/revdep/timing.md @@ -1,29 +1,38 @@ # Check times -| |package |version | check_time| -|:--|:--------------------|:-------|----------:| -|17 |PureCN |1.2.3 | 496.4| -|9 |future |1.4.0 | 489.4| -|19 |Repitools |1.20.0 | 318.7| -|7 |fiery |0.2.2 | 255.6| -|16 |PSCBS |0.62.0 | 199.4| -|21 |TIN |1.6.0 | 147.2| -|18 |QDNAseq |1.10.0 | 137| -|2 |aroma.affymetrix |3.1.0 | 127.7| -|8 |future.BatchJobs |0.14.0 | 124.4| -|10 |GeneBreak |1.4.0 | 122.5| -|15 |PECA |1.10.0 | 108.3| -|6 |doFuture |0.5.0 | 92.7| -|4 |aroma.core |3.1.0 | 77.1| -|20 |R.filesets |2.11.0 | 65.1| -|23 |warbleR |1.1.6 | 59.1| -|12 |MPAgenomics |1.1.2 | 49.4| -|3 |aroma.cn |1.6.1 | 43.1| -|11 |googleComputeEngineR |0.1.0 | 40.6| -|1 |ACNE |0.8.1 | 36.5| -|5 |calmate |0.12.1 | 33.4| -|13 |NSA |0.0.32 | 33| -|22 |vesselr |0.2.1 | 24.9| -|14 |pbmcapply |1.2.1 | 19.8| +| |package |version | check_time| +|:--|:--------------------|:----------|----------:| +|24 |PureCN |1.6.3 | 725.3| +|26 |Repitools |1.22.0 | 331| +|11 |future |1.5.0 | 327.2| +|8 |fiery |0.2.3 | 258.2| +|23 |PSCBS |0.63.0 | 253.9| +|9 |future.BatchJobs |0.14.1 | 243.6| +|10 |future.batchtools |0.5.0 | 174.4| +|30 |TIN |1.8.0 | 154.2| +|2 |aroma.affymetrix |3.1.0 | 144.5| +|25 |QDNAseq |1.12.0 | 136.3| +|12 |GeneBreak |1.6.0 | 130.5| +|21 |PECA |1.12.0 | 121.5| +|20 |PeakSegOptimal |2017.06.20 | 110.3| +|6 |doFuture |0.5.0 | 103.9| +|4 |aroma.core |3.1.0 | 89.6| +|7 |easyml |0.1.0 | 88.5| +|27 |R.filesets |2.11.0 | 75| +|22 |penaltyLearning |2017.06.14 | 61.1| +|15 |MPAgenomics |1.1.2 | 57.8| +|32 |warbleR |1.1.8 | 52.5| +|3 |aroma.cn |1.6.1 | 50.3| +|13 |googleComputeEngineR |0.1.0 | 42.3| +|1 |ACNE |0.8.1 | 41.7| +|5 |calmate |0.12.1 | 40.1| +|16 |NSA |0.0.32 | 38.8| +|14 |kernelboot |0.1.1 | 36.7| +|17 |origami |0.8.0 | 35.8| +|28 |sperrorest |2.0.0 | 27.4| +|29 |startR |0.0.1 | 22.6| +|19 |PeakSegDP |2017.06.20 | 20.9| +|31 |vesselr |0.2.1 | 20.6| +|18 |pbmcapply |1.2.2 | 17.7|