pyproject.toml

[build-system]
requires = ["setuptools>=70", "setuptools-scm>=8"]
build-backend = "setuptools.build_meta"

[project]
name = "funtracks"
dynamic = ["version"]
description = "Cell tracking data model"
readme = "README.md"
license = { text = "BSD 3-Clause License" }
requires-python = ">=3.10"
authors = [
    { name = "Caroline Malin-Mayor", email = "malinmayorc@janelia.hhmi.org" },
]
classifiers = [
    "Development Status :: 2 - Pre-Alpha",
    "Intended Audience :: Developers",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: BSD License",
    "Operating System :: OS Independent",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3 :: Only",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Topic :: Scientific/Engineering :: Image Processing",
]

dependencies =[
    "numpy",
    "pydantic",
    "networkx",
    "psygnal",
    "scikit-image",
]
[project.optional-dependencies]
testing =["pytest", "pytest-cov"]
docs = ["mkdocs-material", "mike", "mkdocstrings[python]", "mkdocs-api-autonav"]
dev = ["ruff", "pre-commit", "mypy"]
all = ["funtracks[testing,docs,dev]"]

[project.urls]
"Bug Tracker" = "https://github.com/funkelab/funtracks/issues"
"Documentation" ="https://funkelab.github.io/funtracks/"

[tool.setuptools_scm]

[tool.ruff]
line-length = 88
target-version = "py310"
fix = true
src = ["src"]

[tool.ruff.lint]
select = [
    "E", "F", "W", #flake8
    "UP", # pyupgrade
    "I", # isort
    "BLE", # flake8-blind-exception
    "B", # flake8-bugbear
    "A", # flake8-builtins
    "C4", # flake8-comprehensions
    "ISC", # flake8-implicit-str-concat
    "G", # flake8-logging-format
    "PIE", # flake8-pie
    "SIM", # flake8-simplify
]
ignore = [
    "UP006", "UP007", # type annotation. As using magicgui require runtime type annotation then we disable this.
    "ISC001", # implicit string concatenation
    "E501", # line too long
]

unfixable = [
  "B905", # currently adds strict=False to zips. Should add strict=True (manually)
]

# https://docs.astral.sh/ruff/formatter/
[tool.ruff.format]

[tool.mypy]
ignore_missing_imports = true

[tool.coverage.report]
exclude_also = [
    "if TYPE_CHECKING:",
]
[tool.pixi.project]
channels = ["conda-forge"]
platforms = ["osx-arm64"]

[tool.pixi.pypi-dependencies]
funtracks = { path = ".", editable = true }

[tool.pixi.environments]
default = { solve-group = "default" }
dev = { features = ["dev"], solve-group = "default" }
docs = { features = ["docs"], solve-group = "default" }
testing = { features = ["testing"], solve-group = "default" }

[tool.pixi.tasks]

[tool.pixi.feature.testing.tasks]
test = "pytest --cov=funtracks tests/"