diff --git a/genetic_diversity/colonising_pairs_patient-matched_gwas_dataset.recombination_density.csv b/genetic_diversity/colonising_pairs_patient-matched_gwas_dataset.recombination_density.csv
new file mode 100644
index 0000000..d8a4feb
--- /dev/null
+++ b/genetic_diversity/colonising_pairs_patient-matched_gwas_dataset.recombination_density.csv
@@ -0,0 +1,2823 @@
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diff --git a/genetic_diversity/colonising_pairs_patient-matched_gwas_dataset.recombination_events.csv b/genetic_diversity/colonising_pairs_patient-matched_gwas_dataset.recombination_events.csv
new file mode 100644
index 0000000..ffb21b4
--- /dev/null
+++ b/genetic_diversity/colonising_pairs_patient-matched_gwas_dataset.recombination_events.csv
@@ -0,0 +1,333 @@
+patient_id	recombination_event	start	end	length	num_var	loci	samples
+auguet2016-P_0295	auguet2016-P_0295-re1	1488016	1488062	47	4	-	ERR1040797.ERR1041038.mrca.auguet2016-P_0295
+chow2017-CD140306	chow2017-CD140306-re1	1924641	1924742	102	5	-;SAOUHSC_02019	18090_5#9.16870_4#16.mrca.chow2017-CD140306
+chow2017-CD140306	chow2017-CD140306-re2	2085454	2085768	315	4	SAOUHSC_02250	18090_5#9.16870_4#16.mrca.chow2017-CD140306
+chow2017-CD140349	chow2017-CD140349-re1	1798213	1798218	6	2	SAOUHSC_01884	16870_2#32.14448_2#90.mrca.chow2017-CD140349
+chow2017-CD140376	chow2017-CD140376-re1	1926591	1928790	2200	8	SAOUHSC_02021;SAOUHSC_02022;SAOUHSC_02023	17059_1#43.16870_2#51.mrca.chow2017-CD140376
+chow2017-CD140376	chow2017-CD140376-re2	1930737	1935380	4644	43	SAOUHSC_02027;SAOUHSC_02028;SAOUHSC_02029;SAOUHSC_02030	17059_1#43.16870_2#51.mrca.chow2017-CD140376
+chow2017-CD140376	chow2017-CD140376-re3	1960909	1961032	124	6	SAOUHSC_02077	17059_1#43.16870_2#51.mrca.chow2017-CD140376
+chow2017-CD140572	chow2017-CD140572-re1	1925715	1926307	593	12	SAOUHSC_02019;SAOUHSC_02020	16870_2#51.16870_2#68.mrca.chow2017-CD140572
+chow2017-CD140572	chow2017-CD140572-re2	2659551	2659698	148	2	SAOUHSC_02885;SAOUHSC_02886	16870_2#51.16870_2#68.mrca.chow2017-CD140572
+chow2017-CD140630	chow2017-CD140630-re1	2085406	2086016	611	29	SAOUHSC_02250;SAOUHSC_02251	16870_2#60.17150_1#21.mrca.chow2017-CD140630
+chow2017-CD140764	chow2017-CD140764-re1	517927	518510	584	2	-	16870_3#10.14324_8#49.mrca.chow2017-CD140764
+chow2017-CD140764	chow2017-CD140764-re2	1960921	1960927	7	2	SAOUHSC_02077	16870_3#11.14324_8#49.mrca.chow2017-CD140764
+chow2017-CD140764	chow2017-CD140764-re3	1962052	1962229	178	8	SAOUHSC_02080	16870_3#10.14324_8#49.mrca.chow2017-CD140764
+chow2017-CD140764	chow2017-CD140764-re4	1965908	1965927	20	2	SAOUHSC_02089	16870_3#11.14324_8#49.mrca.chow2017-CD140764
+chow2017-CD140826	chow2017-CD140826-re1	1960921	1960927	7	2	SAOUHSC_02077	16870_3#72.18090_5#15.mrca.chow2017-CD140826
+chow2017-CD140826	chow2017-CD140826-re2	2063724	2063931	208	11	SAOUHSC_02216	16870_3#72.18090_5#15.mrca.chow2017-CD140826
+chow2017-CD140900	chow2017-CD140900-re1	1464338	1466039	1702	16	-;SAOUHSC_01515;SAOUHSC_01516	18090_5#24.17059_1#37.mrca.chow2017-CD140900
+chow2017-CD140900	chow2017-CD140900-re2	1926917	1928602	1686	9	SAOUHSC_02021;SAOUHSC_02022;SAOUHSC_02023	18090_5#24.17059_1#37.mrca.chow2017-CD140900
+chow2017-CD140900	chow2017-CD140900-re3	1930700	1931024	325	8	-;SAOUHSC_02027	18090_5#24.17059_1#37.mrca.chow2017-CD140900
+chow2017-CD140900	chow2017-CD140900-re4	1933113	1935098	1986	16	SAOUHSC_02029;SAOUHSC_02030	18090_5#24.17059_1#37.mrca.chow2017-CD140900
+chow2017-CD140971	chow2017-CD140971-re1	823153	823198	46	4	SAOUHSC_00851;-	16870_4#18.17059_1#16.mrca.chow2017-CD140971
+chow2017-CD140971	chow2017-CD140971-re2	963753	964047	295	2	SAOUHSC_00992;-	16870_4#17.17059_1#16.mrca.chow2017-CD140971
+chow2017-CD140971	chow2017-CD140971-re3	1924624	1926462	1839	29	-;SAOUHSC_02019;SAOUHSC_02020	16870_4#18.17059_1#16.mrca.chow2017-CD140971
+chow2017-CD140971	chow2017-CD140971-re4	1959486	1959897	412	7	SAOUHSC_02073	16870_4#17.17059_1#16.mrca.chow2017-CD140971
+chow2017-CD140971	chow2017-CD140971-re5	2064003	2064039	37	2	-;SAOUHSC_02217	16870_4#18.17059_1#16.mrca.chow2017-CD140971
+chow2017-CD141653	chow2017-CD141653-re1	1496949	1497071	123	4	SAOUHSC_01560	17150_1#19.17059_1#2.mrca.chow2017-CD141653
+harkins2018-SS_016	harkins2018-SS_016-re1	823178	823197	20	2	-	ERR1903978.SRR3728763.mrca.harkins2018-SS_016
+harkins2018-SS_039	harkins2018-SS_039-re1	2063750	2063763	14	2	SAOUHSC_02216	ERR1903987.SRR3729311.mrca.harkins2018-SS_039
+harkins2018-SS_059	harkins2018-SS_059-re1	1410483	1410490	8	2	-	ERR1904002.ERR1904020.mrca.harkins2018-SS_059
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+harkins2018-SS_157	harkins2018-SS_157-re25	2785558	2785792	235	2	SAOUHSC_03012	ERR1904047.SRR2054008.mrca.harkins2018-SS_157
+harkins2018-SS_268	harkins2018-SS_268-re1	1934592	1935446	855	2	SAOUHSC_02029;SAOUHSC_02030	ERR1904060.SRR3728942.mrca.harkins2018-SS_268
+harkins2018-SS_303	harkins2018-SS_303-re1	119419	119454	36	2	-	ERR1904063.SRR3731708.mrca.harkins2018-SS_303
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+harrison2016-GR02	harrison2016-GR02-re4	1484135	1484221	87	3	SAOUHSC_01536	13414_7#16.13415_2#90.mrca.harrison2016-GR02
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+mpros-1162	mpros-1162-re1	1465111	1465165	55	2	SAOUHSC_01515	14208_8#9.14623_6#70.mrca.mpros-1162
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